Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 31 curated entries in PaperBLAST's database that match '4.1.3.30' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS12285: isocitrate lyase
is similar to:
PaperBLAST

ACEA1_MYCTE / H8EVV4: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis
ACEA1_MYCTO / P9WKK6: Isocitrate lyase 1; ICL1; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; EC 4.1.3.1; EC 4.1.3.30 from Mycobacterium tuberculosis

69% id,
98% cov

ACEA_NEUCR / P28299: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Neurospora crassa

33% id,
75% cov

ACEA_KLULA / Q8NJ72: Isocitrate lyase; ICL; Isocitrase; Isocitratase; Methylisocitrate lyase; MICA; Threo-D(S)-isocitrate glyoxylate-lyase; EC 4.1.3.1; EC 4.1.3.30 from Kluyveromyces lactis

36% id,
62% cov

More...

BPHYT_RS26855: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:
PaperBLAST

Pf6N2E2_6061: Methylisocitrate lyase (EC 4.1.3.30) from Pseudomonas fluorescens

42% id,
100% cov

PRPB_SHEON / Q8EJW1: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Shewanella oneidensis

40% id,
99% cov

RR42_RS11260: Methylisocitrate lyase (EC 4.1.3.30) from Cupriavidus basilensis

40% id,
98% cov

More...

BPHYT_RS25670: carboxyvinyl-carboxyphosphonate phosphorylmutase
is similar to:
PaperBLAST

PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum

39% id,
93% cov

P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis

37% id,
96% cov

PRPB1_CORGL / Q8NSH8: Probable 2-methylisocitrate lyase 1; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum

36% id,
92% cov

More...

BPHYT_RS29750: phosphoenolpyruvate phosphomutase
is similar to:
PaperBLAST

P54528: Methylisocitrate lyase (EC 4.1.3.30) from Bacillus subtilis

33% id,
89% cov

PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum

29% id,
94% cov

PRPB_SHEON / Q8EJW1: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Shewanella oneidensis

28% id,
100% cov

More...

BPHYT_RS20660: 2-methylisocitrate lyase
is similar to:
PaperBLAST

PRPB_ECOLI / P77541: 2-methylisocitrate lyase; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Escherichia coli
YahQ / b0331: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli
prpB / P77541: 2-methylisocitrate lyase (EC 4.1.3.30) from Escherichia coli

31% id,
81% cov

PRPB2_CORGL / Q8NSL2: Probable 2-methylisocitrate lyase 2; 2-MIC; MICL; (2R,3S)-2-methylisocitrate lyase; EC 4.1.3.30 from Corynebacterium glutamicum

29% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory