Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.141' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS28765: fumarylacetoacetate hydrolase
is similar to:
PaperBLAST

HSERO_RS19360: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Herbaspirillum seropedicae

58% id,
99% cov

Ga0059261_1895: 2-keto-3-deoxyxylonate dehydratase (EC 4.2.1.141) from Sphingomonas koreensis

54% id,
98% cov

xylX / A0A0H3C4T2: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Caulobacter vibrioides
CCNA_00866: 2-keto-3-deoxyxylonate dehydratase XylX (EC 4.2.1.141) from Caulobacter crescentus

53% id,
99% cov

More...

BPHYT_RS34210: ureidoglycolate lyase
is similar to:
PaperBLAST

KDXD_HALVD / D4GP28: Probable 2-keto-3-deoxyxylonate dehydratase; KDXD; EC 4.2.1.141 from Haloferax volcanii
xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii

33% id,
58% cov

KDAD_SACS2 / Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase; 2-keto-3-deoxy-D-arabinonate dehydratase; KdaD; EC 4.2.1.141 from Saccharolobus solfataricus
kdaD / Q97UA0: 2-keto-3-deoxy-D-arabinonate dehydratase subunit (EC 4.2.1.141) from Saccharolobus solfataricus
Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Saccharolobus solfataricus

26% id,
54% cov

BPHYT_RS28740: 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase
is similar to:
PaperBLAST

KDXD_HALVD / D4GP28: Probable 2-keto-3-deoxyxylonate dehydratase; KDXD; EC 4.2.1.141 from Haloferax volcanii
xacE / D4GP28: 2-dehydro-3-deoxy-L-arabinonate dehydratase (EC 4.2.1.43; EC 4.2.1.141) from Haloferax volcanii

26% id,
70% cov

Q4J7I6: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Sulfolobus acidocaldarius

28% id,
62% cov

KDAD_SACS2 / Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase; 2-keto-3-deoxy-D-arabinonate dehydratase; KdaD; EC 4.2.1.141 from Saccharolobus solfataricus
kdaD / Q97UA0: 2-keto-3-deoxy-D-arabinonate dehydratase subunit (EC 4.2.1.141) from Saccharolobus solfataricus
Q97UA0: 2-dehydro-3-deoxy-D-arabinonate dehydratase (EC 4.2.1.141) from Saccharolobus solfataricus

28% id,
57% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory