Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 64 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 50 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS30145: aconitate hydratase
is similar to:
PaperBLAST

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

84% id,
100% cov

ACNA_CUPNE / Q937N8: Aconitate hydratase A; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Cupriavidus necator

83% id,
100% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

48% id,
96% cov

More...

BPHYT_RS33975: 2-methylcitrate dehydratase
is similar to:
PaperBLAST

PRPD_CUPNE / Q937N6: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Cupriavidus necator

80% id,
99% cov

PRPD_SALTY / P74840: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Salmonella typhimurium

79% id,
100% cov

PRPD_ECOLI / P77243: 2-methylcitrate dehydratase; 2-MC dehydratase; (2S,3S)-2-methylcitrate dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Escherichia coli

78% id,
100% cov

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BPHYT_RS33980: aconitate hydratase
is similar to:
PaperBLAST

A0A090AMG4: aconitate hydratase (EC 4.2.1.3) from Achromobacter denitrificans

78% id,
100% cov

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

55% id,
99% cov

HP15_3433: Aconitate hydratase (EC 4.2.1.3) from Marinobacter adhaerens

55% id,
98% cov

More...

BPHYT_RS10160: bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
is similar to:
PaperBLAST

ACNB_SALTY / Q8ZRS8: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Salmonella typhimurium

73% id,
99% cov

ACNB_ECOLI / P36683: Aconitate hydratase B; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; 2-methyl-cis-aconitate hydratase; Iron-responsive protein-like; IRP-like; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Escherichia coli
acnB / GB|AAZ86920.1: aconitate hydratas; EC 4.2.1.3 from Escherichia coli
P36683: aconitate hydratase (EC 4.2.1.3) from Escherichia coli

73% id,
99% cov

A0A2X5AHR8: aconitate hydratase (EC 4.2.1.3) from Helicobacter pylori

61% id,
100% cov

More...

BPHYT_RS02995: 2-methylcitrate dehydratase
is similar to:
PaperBLAST

PRPD_MYCTE / H8F0D6: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Mycobacterium tuberculosis

25% id,
88% cov

PRPD_MYCTU / O06582: 2-methylcitrate dehydratase; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Mycobacterium tuberculosis

25% id,
84% cov

PRPD2_CORGL / Q8NSL3: 2-methylcitrate dehydratase 2; 2-MC dehydratase; Aconitate hydratase; ACN; Aconitase; EC 4.2.1.79; EC 4.2.1.3 from Corynebacterium glutamicum

23% id,
83% cov

BPHYT_RS23060: 3-isopropylmalate dehydratase large subunit
is similar to:
PaperBLAST

ACON_SCHPO / O13966: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Schizosaccharomyces pombe

27% id,
57% cov

ACND_SHEON / Q8EJW3: 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming); Aconitate hydratase; ACN; Aconitase; EC 4.2.1.117; EC 4.2.1.3 from Shewanella oneidensis

29% id,
44% cov

Q9P7D4: aconitate hydratase (EC 4.2.1.3) from Schizosaccharomyces pombe

28% id,
42% cov

More...

BPHYT_RS13520: isopropylmalate isomerase
is similar to:
PaperBLAST

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

24% id,
59% cov

ACOHC_MOUSE / P28271: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Mus musculus
P28271: aconitate hydratase (EC 4.2.1.3) from Mus musculus

28% id,
44% cov

ACOHC_RABIT / Q01059: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Ferritin repressor protein; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Oryctolagus cuniculus

27% id,
44% cov

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BPHYT_RS33915: isopropylmalate isomerase
is similar to:
PaperBLAST

Q8RP87: aconitate hydratase (EC 4.2.1.3) from Bacteroides fragilis

31% id,
16% cov

BPHYT_RS33905: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACNA_THET8 / Q5SMF6: Aconitate hydratase A; ACN; Aconitase; (2R,3S)-2-methylisocitrate dehydratase; (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate dehydratase; Iron-responsive protein-like; IRP-like; Probable 2-methyl-cis-aconitate hydratase; RNA-binding protein; EC 4.2.1.3; EC 4.2.1.99 from Thermus thermophilus

30% id,
15% cov

D3GQL0: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

29% id,
15% cov

ACOHC_MOUSE / P28271: Cytoplasmic aconitate hydratase; Aconitase; Citrate hydro-lyase; Iron regulatory protein 1; IRP1; Iron-responsive element-binding protein 1; IRE-BP 1; EC 4.2.1.3 from Mus musculus
P28271: aconitate hydratase (EC 4.2.1.3) from Mus musculus

29% id,
15% cov

More...

BPHYT_RS13515: 3-isopropylmalate dehydratase small subunit
is similar to:
PaperBLAST

ACON_YEAST / P19414: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Saccharomyces cerevisiae
P19414: aconitate hydratase (EC 4.2.1.3) from Saccharomyces cerevisiae

37% id,
12% cov

ACON_SCHPO / O13966: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Schizosaccharomyces pombe

38% id,
11% cov

ACO1: aconitate hydratase; EC 4.2.1.3 from Candida albicans

39% id,
10% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory