Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 28 curated entries in PaperBLAST's database that match '4.2.1.8' as complete word(s).

These curated entries have 24 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS23430: bifunctional D-altronate/D-mannonate dehydratase
is similar to:
PaperBLAST

MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii

78% id,
100% cov

MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum

78% id,
100% cov

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

77% id,
100% cov

More...

BPHYT_RS28515: mannonate dehydratase
is similar to:
PaperBLAST

uxuA / Q9WXS4: D-mannonate dehydratase (EC 4.2.1.8) from Thermotoga maritima

55% id,
98% cov

A4VVI4: mannonate dehydratase (EC 4.2.1.8) from Streptococcus suis

54% id,
93% cov

Q1QT83: mannonate dehydratase (EC 4.2.1.8) from Chromohalobacter salexigens

47% id,
47% cov

More...

BPHYT_RS10980: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
is similar to:
PaperBLAST

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

52% id,
99% cov

MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum

43% id,
99% cov

MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii

43% id,
99% cov

More...

BPHYT_RS16405: galactonate dehydratase
is similar to:
PaperBLAST

DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens

35% id,
100% cov

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

33% id,
100% cov

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

34% id,
93% cov

More...

BPHYT_RS09885: isomerase
is similar to:
PaperBLAST

MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii

27% id,
98% cov

DMGD_CHRSD / Q1QT89: D-galactonate dehydratase family member ManD; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Chromohalobacter salexigens

27% id,
97% cov

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

27% id,
97% cov

More...

BPHYT_RS31965: mandelate racemase
is similar to:
PaperBLAST

MAND2_CAUVC / Q9AAR4: D-mannonate dehydratase CC0532; ManD; EC 4.2.1.8 from Caulobacter vibrioides
A0A0H3C643: mannonate dehydratase (EC 4.2.1.8) from Caulobacter vibrioides

28% id,
91% cov

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

28% id,
90% cov

MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum

27% id,
90% cov

More...

BPHYT_RS28240: L-rhamnonate dehydratase
is similar to:
PaperBLAST

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

28% id,
91% cov

MAND_ESCAT / B1ELW6: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Escherichia albertii

28% id,
91% cov

MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum

27% id,
91% cov

More...

BPHYT_RS31620: mandelate racemase
is similar to:
PaperBLAST

MAND1_CAUSK / B0T0B1: D-mannonate dehydratase Caul1427; ManD; EC 4.2.1.8 from Caulobacter sp.

31% id,
51% cov

MAND_MARMS / A6VRA1: D-galactonate dehydratase family member Mmwyl1_0037; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Marinomonas sp.

28% id,
54% cov

MAND2_CAUSK / B0T4L2: D-mannonate dehydratase Caul1835; ManD; EC 4.2.1.8 from Caulobacter sp.

27% id,
56% cov

More...

BPHYT_RS10675: muconate cycloisomerase
is similar to:
PaperBLAST

DMGD_HALED / E1V4Y0: D-galactonate dehydratase family member RspA; D-gluconate dehydratase; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Halomonas elongata

24% id,
53% cov

MAND_RHIWR / A5V6Z0: D-mannonate dehydratase; ManD; EC 4.2.1.8 from Rhizorhabdus wittichii

26% id,
43% cov

MAND_NOVAD / A4XF23: D-mannonate dehydratase; ManD; RspA homolog; EC 4.2.1.8 from Novosphingobium aromaticivorans

24% id,
47% cov

More...

BPHYT_RS07840: muconate cycloisomerase
is similar to:
PaperBLAST

MAND_PECCP / C6D9S0: D-galactonate dehydratase family member PC1_0802; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Pectobacterium carotovorum

26% id,
47% cov

MAND_ENT38 / A4WA78: D-galactonate dehydratase family member Ent638_1932; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Enterobacter sp.

26% id,
47% cov

MAND_SALG2 / B5RAG0: D-galactonate dehydratase family member RspA; D-mannonate dehydratase; Starvation sensing protein RspA homolog; EC 4.2.1.-; EC 4.2.1.8 from Salmonella gallinarum

25% id,
47% cov

More...

BPHYT_RS31145: glucarate dehydratase
is similar to:
PaperBLAST

DMGD_MUSP7 / C6CBG9: D-galactonate dehydratase family member Dd703_0947; D-gluconate dehydratase; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.39; EC 4.2.1.8 from Musicola paradisiaca

26% id,
24% cov

MAND_STRS3 / D9UNB2: D-galactonate dehydratase family member SSLG_02014; D-mannonate dehydratase; EC 4.2.1.-; EC 4.2.1.8 from Streptomyces sp.

27% id,
17% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 11 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory