Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 17 curated entries in PaperBLAST's database that match '4.2.1.82' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS31695: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

66% id,
100% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

66% id,
99% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

62% id,
100% cov

More...

BPHYT_RS19730: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

44% id,
100% cov

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

44% id,
100% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

43% id,
100% cov

More...

BPHYT_RS21270: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

40% id,
95% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

39% id,
95% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

38% id,
97% cov

More...

BPHYT_RS16405: galactonate dehydratase
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

36% id,
97% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

31% id,
88% cov

BPHYT_RS09885: isomerase
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

35% id,
93% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

32% id,
91% cov

BPHYT_RS25650: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

34% id,
92% cov

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides
Q9A9Z2: xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides

34% id,
91% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

30% id,
99% cov

More...

BPHYT_RS04815: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

33% id,
87% cov

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

32% id,
88% cov

XYLD_CAUVC / Q9A9Z2: D-xylonate dehydratase; XyDHT; Gluconate dehydratase; EC 4.2.1.82; EC 4.2.1.39 from Caulobacter vibrioides
Q9A9Z2: xylonate dehydratase (EC 4.2.1.82) from Caulobacter vibrioides

33% id,
86% cov

More...

BPHYT_RS31965: mandelate racemase
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

30% id,
93% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

28% id,
85% cov

BPHYT_RS10980: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

29% id,
89% cov

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

27% id,
88% cov

BPHYT_RS10100: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli
YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

31% id,
80% cov

YAGF_ECOLI / P77596: D-xylonate dehydratase YagF; EC 4.2.1.82 from Escherichia coli
YagF / b0269: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yagF / P77596: CP4-6 prophage; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

32% id,
76% cov

xylD / A0A0H3C6H6: xylonate dehydratase monomer (EC 4.2.1.82) from Caulobacter vibrioides
CCNA_00862: Xylonate dehydratase (EC 4.2.1.82) from Caulobacter crescentus

34% id,
51% cov

More...

BPHYT_RS23430: bifunctional D-altronate/D-mannonate dehydratase
is similar to:
PaperBLAST

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

29% id,
86% cov

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

28% id,
86% cov

BPHYT_RS16735: phosphogluconate dehydratase
is similar to:
PaperBLAST

YJHG_ECOLI / P39358: D-xylonate dehydratase YjhG; EC 4.2.1.82 from Escherichia coli
YjhG / b4297: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
yjhG / P39358: KpLE2 phage-like element; D-xylonate dehydratase (EC 4.2.1.82) from Escherichia coli
P39358: xylonate dehydratase (EC 4.2.1.82) from Escherichia coli

31% id,
79% cov

Pf6N2E2_1668: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

26% id,
87% cov

AO356_28760: Xylonate dehydratase (EC 4.2.1.82) from Pseudomonas fluorescens

26% id,
87% cov

BPHYT_RS31145: glucarate dehydratase
is similar to:
PaperBLAST

SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus

25% id,
95% cov

BPHYT_RS28240: L-rhamnonate dehydratase
is similar to:
PaperBLAST

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

26% id,
83% cov

BPHYT_RS20755: fuconate dehydratase
is similar to:
PaperBLAST

XAD_HALVD / D4GP40: D-xylonate dehydratase; XAD; EC 4.2.1.82 from Haloferax volcanii
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii
D4GP40: xylonate dehydratase (EC 4.2.1.82) from Haloferax volcanii

21% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory