Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 15 curated entries in PaperBLAST's database that match '4.2.1.9' as complete word(s).

These curated entries have 11 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS04815: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

87% id,
100% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

48% id,
97% cov

ILVD_ARATH / Q9LIR4: Dihydroxy-acid dehydratase, chloroplastic; AthDHAD; DAD; EC 4.2.1.9 from Arabidopsis thaliana
Q9LIR4: dihydroxy-acid dehydratase (EC 4.2.1.9) from Arabidopsis thaliana

47% id,
91% cov

More...

BPHYT_RS10100: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILVD_ECOLI / P05791: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Escherichia coli
IlvD / b3771: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli
ilvD / P05791: dihydroxy-acid dehydratase (EC 4.2.1.9) from Escherichia coli

75% id,
100% cov

ILVD_RHIL3 / Q1MIB2: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Rhizobium leguminosarum

75% id,
100% cov

ILVD_CAUVC / P55186: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Caulobacter vibrioides

73% id,
100% cov

More...

BPHYT_RS25650: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

47% id,
97% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

42% id,
99% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

42% id,
97% cov

More...

BPHYT_RS19730: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

38% id,
97% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

37% id,
96% cov

ILVD_MYCTU / P9WKJ5: Dihydroxy-acid dehydratase; DAD; EC 4.2.1.9 from Mycobacterium tuberculosis

37% id,
94% cov

More...

BPHYT_RS21270: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

37% id,
97% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

35% id,
97% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

33% id,
99% cov

More...

BPHYT_RS31695: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

34% id,
96% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

33% id,
92% cov

Q97UB2: dihydroxy-acid dehydratase (EC 4.2.1.9) from Saccharolobus solfataricus

32% id,
90% cov

More...

BPHYT_RS16735: phosphogluconate dehydratase
is similar to:
PaperBLAST

Q8NQZ9: dihydroxy-acid dehydratase (EC 4.2.1.9) from Corynebacterium glutamicum

32% id,
94% cov

ilvDD / O27498: dihydroxy-acid dehydratase subunit (EC 4.2.1.9) from Methanothermobacter thermautotrophicus

30% id,
96% cov

ilvD / Q0K7F8: dihydroxyacid dehydratase (EC 4.2.1.9) from Cupriavidus necator
Q0K7F8: dihydroxy-acid dehydratase (EC 4.2.1.9) from Cupriavidus necator

30% id,
93% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory