Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 14 curated entries in PaperBLAST's database that match '5.1.1.4' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS28265: hypothetical protein
is similar to:
PaperBLAST

PRAC_ACESD / E3PTZ4: Proline racemase; PR; AsProR; CsPR; EC 5.1.1.4 from Acetoanaerobium sticklandii

42% id,
100% cov

Q9L4Q3: proline racemase (EC 5.1.1.4) from Acetoanaerobium sticklandii

42% id,
100% cov

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

41% id,
100% cov

More...

BPHYT_RS22640: hydroxyproline-2-epimerase
is similar to:
PaperBLAST

PRAC_CLODI / A8DEZ8: Proline racemase; CdPRAC; EC 5.1.1.4 from Clostridioides difficile
Q17ZY4: proline racemase (EC 5.1.1.4) from Clostridioides difficile
A8DEZ8: proline racemase (EC 5.1.1.4) from Clostridioides difficile

35% id,
99% cov

B8LFE4: proline racemase (EC 5.1.1.4) from Trypanosoma vivax

34% id,
99% cov

M0LMI3: proline racemase (EC 5.1.1.4) from Haloarcula japonica

35% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory