Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 11 curated entries in PaperBLAST's database that match '5.3.1.30' as complete word(s).

These curated entries have 9 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS13925: 5-deoxyglucuronate isomerase
is similar to:
PaperBLAST

BPHYT_RS13925: 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Burkholderia phytofirmans

100% id,
100% cov

PS417_11860: 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Pseudomonas simiae

61% id,
100% cov

AO353_21345: 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Pseudomonas fluorescens

60% id,
100% cov

More...

BPHYT_RS28505: 5-deoxyglucuronate isomerase
is similar to:
PaperBLAST

BWI76_RS03075: 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Klebsiella michiganensis

58% id,
95% cov

SMc00432: 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Sinorhizobium meliloti

56% id,
99% cov

BPHYT_RS13925: 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) from Burkholderia phytofirmans

53% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory