Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS07840: muconate cycloisomerase
is similar to:
PaperBLAST

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

63% id,
99% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

63% id,
99% cov

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

62% id,
97% cov

More...

BPHYT_RS10675: muconate cycloisomerase
is similar to:
PaperBLAST

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

58% id,
99% cov

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

58% id,
99% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

58% id,
98% cov

More...

BPHYT_RS09885: isomerase
is similar to:
PaperBLAST

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

27% id,
96% cov

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

26% id,
89% cov

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

26% id,
50% cov

More...

BPHYT_RS31145: glucarate dehydratase
is similar to:
PaperBLAST

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

27% id,
87% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

26% id,
89% cov

CATB_PSEPU / P08310: Muconate cycloisomerase 1; Cis,cis-muconate lactonizing enzyme I; MLE; Muconate cycloisomerase I; EC 5.5.1.1 from Pseudomonas putida
catB / P08310: muconate lactonizing enzyme subunit (EC 5.5.1.1) from Pseudomonas putida

26% id,
90% cov

More...

BPHYT_RS28240: L-rhamnonate dehydratase
is similar to:
PaperBLAST

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

24% id,
94% cov

BPHYT_RS16405: galactonate dehydratase
is similar to:
PaperBLAST

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

25% id,
87% cov

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

24% id,
89% cov

BPHYT_RS10980: 2-dehydro-3-deoxy-6-phosphogalactonate aldolase
is similar to:
PaperBLAST

catB / A0F0B3: muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

25% id,
43% cov

Q4K9X1: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas fluorescens

28% id,
38% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

26% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory