Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 14 curated entries in PaperBLAST's database that match '6.3.1.11'.

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS23160: glutamine synthetase
is similar to:
PaperBLAST

BPHYT_RS23160: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Burkholderia phytofirmans

100% id,
100% cov

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

56% id,
100% cov

Pf1N1B4_2254: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

35% id,
98% cov

More...

BPHYT_RS09955: glutamine synthetase
is similar to:
PaperBLAST

BPHYT_RS23160: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Burkholderia phytofirmans

60% id,
100% cov

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

53% id,
99% cov

Pf1N1B4_2254: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

33% id,
98% cov

More...

BPHYT_RS12945: glutamine synthetase
is similar to:
PaperBLAST

SO1268: Glutamate--putrescine ligase (EC 6.3.1.11) from Shewanella oneidensis

28% id,
95% cov

Psest_4288: Glutamate--putrescine ligase (EC 6.3.1.11) from Pseudomonas stutzeri

27% id,
96% cov

Pf1N1B4_2254: Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) from Pseudomonas fluorescens

27% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory