Curated BLAST for Genomes

 

Curated BLAST

Searching in Burkholderia phytofirmans PsJN (BFirm)

Found 2 curated entries in PaperBLAST's database that match '5-deoxy-glucuronate isomerase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Burkholderia phytofirmans PsJN, or try another query

BPHYT_RS28505: 5-deoxyglucuronate isomerase
is similar to:
PaperBLAST

IOLB_BACSU / P42413: 5-deoxy-glucuronate isomerase; 5DG isomerase; EC 5.3.1.30 from Bacillus subtilis
P42413: 5-deoxy-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis

46% id,
100% cov

BPHYT_RS13925: 5-deoxyglucuronate isomerase
is similar to:
PaperBLAST

IOLB_BACSU / P42413: 5-deoxy-glucuronate isomerase; 5DG isomerase; EC 5.3.1.30 from Bacillus subtilis
P42413: 5-deoxy-glucuronate isomerase (EC 5.3.1.30) from Bacillus subtilis

48% id,
94% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory