Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 23 curated entries in PaperBLAST's database that match '1.1.1.103'.

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1370: NAD dependent nucleotide-diphosphate-sugar epimerase (NCBI ptt file)
is similar to:
PaperBLAST

E3PS87: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Acetoanaerobium sticklandii

61% id,
99% cov

E5RQ20: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Cupriavidus necator

48% id,
97% cov

Q97BK3: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Thermoplasma volcanium

44% id,
97% cov

More...

BT3767: lactaldehyde reductase (NCBI ptt file)
is similar to:
PaperBLAST

YiaY / b3589: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
yiaY / P37686: L-threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli

44% id,
93% cov

BT3617: sorbitol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

TDH_PYRFU / Q8U259: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Pyrococcus furiosus

31% id,
99% cov

TDH_ECOLI / P07913: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli
Tdh / b3616: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
tdh / P07913: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
P07913: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Escherichia coli

30% id,
84% cov

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis

29% id,
78% cov

BT4512: putative zinc-type alcohol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis

27% id,
94% cov

BT4424: sorbitol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

TDH_ECOLI / P07913: L-threonine 3-dehydrogenase; TDH; L-threonine dehydrogenase; EC 1.1.1.103 from Escherichia coli
Tdh / b3616: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
tdh / P07913: threonine dehydrogenase (EC 1.1.1.103) from Escherichia coli
P07913: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Escherichia coli

25% id,
96% cov

PGA1_c34320: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Phaeobacter inhibens

24% id,
95% cov

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis

25% id,
94% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5827102-5828157 (frame +1) on 241
is similar to:
PaperBLAST

O31776: L-threonine 3-dehydrogenase (EC 1.1.1.103) from Bacillus subtilis
Also see hits to annotated proteins above

25% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory