Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 77 curated entries in PaperBLAST's database that match '1.1.1.25'.

These curated entries have 56 distinct sequences.

Running ublast with E ≤ 0.01

Found 15 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT4215: shikimate 5-dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

BT4215: shikimate dehydrogenase (EC 1.1.1.25) from Bacteroides thetaiotaomicron

100% id,
100% cov

CA265_RS19745: shikimate dehydrogenase (EC 1.1.1.25) from Pedobacter sp.

51% id,
100% cov

AROE_AQUAE / O67049: Shikimate dehydrogenase (NADP(+)); SD; SDH; EC 1.1.1.25 from Aquifex aeolicus
O67049: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aquifex aeolicus

37% id,
91% cov

More...

BT3232: gluconate 5-dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Q9WYD3: D-arabinitol 2-dehydrogenase (EC 1.1.1.250) from Thermotoga maritima

39% id,
97% cov

ARDH / P50167: D-arabinitol 2-dehydrogenase monomer (EC 1.1.1.250) from Scheffersomyces stipitis

32% id,
96% cov

T4HR_ZYMTI / F9XMW6: Probable tetrahydroxynaphthalene reductase MYCGRDRAFT_87994; Conidial pigment biosynthesis cluster 29 protein MYCGRDRAFT_87994; EC 1.1.1.252 from Zymoseptoria tritici

27% id,
98% cov

More...

BT3771: 3-oxoacyl-[acyl-carrier protein] reductase (NCBI ptt file)
is similar to:
PaperBLAST

tsaC / P94681: 4-sulfobenzyl alcohol dehydrogenase subunit (EC 1.1.1.257) from Comamonas testosteroni

38% id,
99% cov

Q9WYD3: D-arabinitol 2-dehydrogenase (EC 1.1.1.250) from Thermotoga maritima

39% id,
96% cov

T4HR_PYRO7 / Q12634: Tetrahydroxynaphthalene reductase; T4HN reductase; THNR; EC 1.1.1.252 from Pyricularia oryzae
Q12634: tetrahydroxynaphthalene reductase (EC 1.1.1.252) from Pyricularia oryzae

32% id,
91% cov

More...

BT1433: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Q9WYD3: D-arabinitol 2-dehydrogenase (EC 1.1.1.250) from Thermotoga maritima

35% id,
99% cov

tsaC / P94681: 4-sulfobenzyl alcohol dehydrogenase subunit (EC 1.1.1.257) from Comamonas testosteroni

28% id,
99% cov

FLNB_TERSD / Q93UV4: Fluoren-9-ol dehydrogenase; 1,1a-dihydroxy-1-hydro-9-fluorenone dehydrogenase; DHF dehydrogenase; EC 1.1.1.256 from Terrabacter sp.

31% id,
57% cov

More...

BT1911: 7-alpha-hydroxysteroid dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

tsaC / P94681: 4-sulfobenzyl alcohol dehydrogenase subunit (EC 1.1.1.257) from Comamonas testosteroni

34% id,
100% cov

Q9WYD3: D-arabinitol 2-dehydrogenase (EC 1.1.1.250) from Thermotoga maritima

30% id,
96% cov

T4HR_ZYMTI / F9XMW6: Probable tetrahydroxynaphthalene reductase MYCGRDRAFT_87994; Conidial pigment biosynthesis cluster 29 protein MYCGRDRAFT_87994; EC 1.1.1.252 from Zymoseptoria tritici

28% id,
96% cov

More...

BT1015: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Q9WYD3: D-arabinitol 2-dehydrogenase (EC 1.1.1.250) from Thermotoga maritima

34% id,
99% cov

Q9HFV6: tetrahydroxynaphthalene reductase (EC 1.1.1.252) from Pyricularia grisea

27% id,
98% cov

PFMAG_PESFW / W3XAA0: Tetrahydroxynaphthalene reductase PfmaG; Conidial pigment biosynthesis cluster protein G; EC 1.1.1.252 from Pestalotiopsis fici

26% id,
94% cov

BT3617: sorbitol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

GATD_ECOLI / P0A9S3: Galactitol 1-phosphate 5-dehydrogenase; EC 1.1.1.251 from Escherichia coli
GatD / b2091: galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) from Escherichia coli
gatD / P0A9S3: galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) from Escherichia coli
P0A9S3: galactitol-1-phosphate 5-dehydrogenase (EC 1.1.1.251) from Escherichia coli

31% id,
100% cov

MTD / Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens
Q38707: mannitol dehydrogenase (EC 1.1.1.255) from Apium graveolens

26% id,
70% cov

BT0130: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

T4HR_ZYMTI / F9XMW6: Probable tetrahydroxynaphthalene reductase MYCGRDRAFT_87994; Conidial pigment biosynthesis cluster 29 protein MYCGRDRAFT_87994; EC 1.1.1.252 from Zymoseptoria tritici

30% id,
95% cov

tsaC / P94681: 4-sulfobenzyl alcohol dehydrogenase subunit (EC 1.1.1.257) from Comamonas testosteroni

29% id,
97% cov

ARDH / P50167: D-arabinitol 2-dehydrogenase monomer (EC 1.1.1.250) from Scheffersomyces stipitis

29% id,
96% cov

More...

BT4512: putative zinc-type alcohol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

chnD / Q9F7D8: 6-hydroxyhexanoate dehydrogenase (EC 1.1.1.258) from Acinetobacter sp.

25% id,
100% cov

BT0972: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Q9WYD3: D-arabinitol 2-dehydrogenase (EC 1.1.1.250) from Thermotoga maritima

31% id,
78% cov

T4HR_ZYMTI / F9XMW6: Probable tetrahydroxynaphthalene reductase MYCGRDRAFT_87994; Conidial pigment biosynthesis cluster 29 protein MYCGRDRAFT_87994; EC 1.1.1.252 from Zymoseptoria tritici

27% id,
70% cov

BT2380: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Q9WYD3: D-arabinitol 2-dehydrogenase (EC 1.1.1.250) from Thermotoga maritima

29% id,
75% cov

BT1651: pyrophosphorylase (NCBI ptt file)
is similar to:
PaperBLAST

tsaC / P94681: 4-sulfobenzyl alcohol dehydrogenase subunit (EC 1.1.1.257) from Comamonas testosteroni

24% id,
80% cov

BT2186: 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

32% id,
29% cov

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

33% id,
27% cov

BT3975: 3-dehydroquinate synthase (NCBI ptt file)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

32% id,
22% cov

ARO1_YEAST / P08566: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Saccharomyces cerevisiae
ARO1 / P08566: pentafunctional AROM polypeptide (EC 4.2.3.4; EC 1.1.1.25; EC 2.7.1.71; EC 2.5.1.19; EC 4.2.1.10) from Saccharomyces cerevisiae

30% id,
23% cov

Q6W3D0: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Toxoplasma gondii

33% id,
6% cov

More...

BT3393: shikimate kinase (NCBI ptt file)
is similar to:
PaperBLAST

ARO1_EMENI / P07547: Pentafunctional AROM polypeptide; EC 4.2.3.4; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 1.1.1.25 from Emericella nidulans
aromA: pentafunctional AROM polypeptide; EC 1.1.1.25; EC 2.5.1.19; EC 2.7.1.71; EC 4.2.1.10; EC 4.2.3.4 from Emericella nidulans
P07547: shikimate dehydrogenase (NADP+) (EC 1.1.1.25) from Aspergillus nidulans

35% id,
5% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 14 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory