Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 67 curated entries in PaperBLAST's database that match '1.1.1.42' as complete word(s).

These curated entries have 46 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT2071: isocitrate dehydrogenase [NADP] (NCBI ptt file)
is similar to:
PaperBLAST

IDH_COXBU / Q9ZH99: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Coxiella burnetii

63% id,
95% cov

Q1XIQ8: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Colwellia psychrerythraea

60% id,
97% cov

IDH_ECOLI / P08200: Isocitrate dehydrogenase [NADP]; IDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Escherichia coli
IcdE / b1136: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
icd / P08200: isocitrate dehydrogenase (EC 1.1.1.42) from Escherichia coli
P08200: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42); [Isocitrate dehydrogenase (NADP+)] kinase (EC 2.7.11.5) from Escherichia coli

59% id,
97% cov

More...

BT1857: 3-isopropylmalate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

IDH_HALVD / D4GU92: Isocitrate dehydrogenase [NADP]; IDH; ICDH; IDP; NADP(+)-specific ICDH; Oxalosuccinate decarboxylase; EC 1.1.1.42 from Haloferax volcanii

27% id,
92% cov

O29610: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Archaeoglobus fulgidus

27% id,
93% cov

P96318: isocitrate dehydrogenase (NADP+) (EC 1.1.1.42) from Caldococcus noboribetus

26% id,
90% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory