Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 10 curated entries in PaperBLAST's database that match '1.1.1.46'.

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 13 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3232: gluconate 5-dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

38% id,
91% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

37% id,
91% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

37% id,
91% cov

More...

BT3771: 3-oxoacyl-[acyl-carrier protein] reductase (NCBI ptt file)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

35% id,
92% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

34% id,
92% cov

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

33% id,
96% cov

More...

BT1015: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

32% id,
99% cov

BPHYT_RS16920: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Burkholderia phytofirmans

31% id,
99% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

32% id,
95% cov

More...

BT1911: 7-alpha-hydroxysteroid dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Shewana3_2071: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Shewanella sp.

33% id,
96% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
93% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

33% id,
93% cov

More...

BT0130: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
92% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

30% id,
92% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
92% cov

More...

BT1433: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

29% id,
91% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

29% id,
91% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
91% cov

More...

BT0409: putative short-chain dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
86% cov

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
86% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

30% id,
86% cov

More...

BT2380: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

31% id,
74% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens

30% id,
73% cov

PfGW456L13_2119: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

30% id,
74% cov

More...

BT0972: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens

28% id,
81% cov

BT1651: pyrophosphorylase (NCBI ptt file)
is similar to:
PaperBLAST

HSERO_RS05210: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Herbaspirillum seropedicae

21% id,
82% cov

BT3470: putative dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

23% id,
50% cov

BT3581: putative dehydrogenases and relate proteins (NCBI ptt file)
is similar to:
PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

29% id,
35% cov

BT3586: putative dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

SMc00588: L-arabinose 1-dehydrogenase; D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Sinorhizobium meliloti

30% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2968722-2969450 (frame +3) on 241
is similar to:
PaperBLAST

Pf1N1B4_412: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

31% id,
76% cov

AO356_20240: L-arabinose 1-dehydrogenase (EC 1.1.1.46) from Pseudomonas fluorescens
Also see hits to annotated proteins above

30% id,
76% cov

Pf6N2E2_5967: L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) from Pseudomonas fluorescens
Also see hits to annotated proteins above

30% id,
76% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory