Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 9 curated entries in PaperBLAST's database that match '1.1.1.87'.

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1857: 3-isopropylmalate dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87 from Methanocaldococcus jannaschii
aksF / Q58991: NAD-dependent threo-isocitrate dehydrogenase (EC 1.1.1.87) from Methanocaldococcus jannaschii

39% id,
98% cov

HICDH_THET2 / Q72IW9: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Thermus thermophilus
HICDH_THET8 / Q5SIJ1: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Thermus thermophilus
hicdh / Q5SIJ1: homoisocitrate dehydrogenase subunit (EC 1.1.1.87) from Thermus thermophilus
Q5SIJ1: homoisocitrate dehydrogenase (EC 1.1.1.87) from Thermus thermophilus

34% id,
100% cov

LYS12_SCHPO / O14104: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Schizosaccharomyces pombe

32% id,
95% cov

More...

BT2071: isocitrate dehydrogenase [NADP] (NCBI ptt file)
is similar to:
PaperBLAST

LYS12_YEAST / P40495: Homoisocitrate dehydrogenase, mitochondrial; HIcDH; EC 1.1.1.87 from Saccharomyces cerevisiae
P40495: homoisocitrate dehydrogenase (EC 1.1.1.87) from Saccharomyces cerevisiae

32% id,
94% cov

AKSF_METJA / Q58991: Homoisocitrate dehydrogenase; HICDH; Isohomocitrate dehydrogenase; IHDH; NAD-dependent threo-isohomocitrate dehydrogenase; EC 1.1.1.87 from Methanocaldococcus jannaschii
aksF / Q58991: NAD-dependent threo-isocitrate dehydrogenase (EC 1.1.1.87) from Methanocaldococcus jannaschii

30% id,
98% cov

LYS12_SCHPO / O14104: Homoisocitrate dehydrogenase; HICDH; EC 1.1.1.87 from Schizosaccharomyces pombe

28% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory