Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 35 curated entries in PaperBLAST's database that match '1.1.1.9' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3771: 3-oxoacyl-[acyl-carrier protein] reductase (NCBI ptt file)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

32% id,
98% cov

BT3617: sorbitol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Q2K0Q7: D-xylulose reductase (EC 1.1.1.9) from Rhizobium etli

30% id,
99% cov

PS417_17720: xylitol 2-dehydrogenase (EC 1.1.1.9) from Pseudomonas simiae

31% id,
97% cov

BPHYT_RS16050: xylitol 2-dehydrogenase (EC 1.1.1.9) from Burkholderia phytofirmans

32% id,
92% cov

More...

BT0130: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

29% id,
100% cov

BT1015: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

29% id,
97% cov

BT4424: sorbitol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

A0A1B4XTS0: L-arabinitol 4-dehydrogenase (EC 1.1.1.12); D-xylulose reductase (EC 1.1.1.9) from Meyerozyma caribbica

27% id,
98% cov

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / Q06004: glucitol dehydrogenase monomer (EC 1.1.1.9; EC 1.1.1.14) from Bacillus subtilis

26% id,
97% cov

PS417_17720: xylitol 2-dehydrogenase (EC 1.1.1.9) from Pseudomonas simiae

24% id,
97% cov

More...

BT4512: putative zinc-type alcohol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina

26% id,
96% cov

BPHYT_RS16050: xylitol 2-dehydrogenase (EC 1.1.1.9) from Burkholderia phytofirmans

27% id,
93% cov

DHSO_ARATH / Q9FJ95: Sorbitol dehydrogenase; SDH; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.56; EC 1.1.1.9 from Arabidopsis thaliana

29% id,
88% cov

More...

BT1911: 7-alpha-hydroxysteroid dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

32% id,
72% cov

BT2380: putative oxidoreductase (NCBI ptt file)
is similar to:
PaperBLAST

Q8GR61: D-xylulose reductase (EC 1.1.1.9) from Gluconobacter oxydans

28% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5928744-5929874 (frame +3) on 241
is similar to:
PaperBLAST

xdh1 / Q876R2: D-sorbitol dehydrogenase (EC 1.1.1.14; EC 1.1.1.9) from Hypocrea jecorina
Also see hits to annotated proteins above

26% id,
99% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory