Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 183 curated entries in PaperBLAST's database that match '1.2.1.3'.

These curated entries have 135 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3759: N-acetyl-gamma-glutamyl-phosphate reductase (NCBI ptt file)
is similar to:
PaperBLAST

CA265_RS18540: N-succinylglutamylphosphate reductase (EC 1.2.1.38) from Pedobacter sp.

61% id,
99% cov

ARGC_GEOSE / Q07906: N-acetyl-gamma-glutamyl-phosphate reductase; AGPR; N-acetyl-glutamate semialdehyde dehydrogenase; NAGSA dehydrogenase; EC 1.2.1.38 from Geobacillus stearothermophilus

36% id,
99% cov

N515DRAFT_3769: N-acetylglutamylphosphate reductase (EC 1.2.1.38) from Dyella japonica

30% id,
97% cov

More...

BT4512: putative zinc-type alcohol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

33% id,
98% cov

BT3115: putative proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydraogenase (NCBI ptt file)
is similar to:
PaperBLAST

AL8A1_MOUSE / Q8BH00: 2-aminomuconic semialdehyde dehydrogenase; Aldehyde dehydrogenase family 8 member A1; Retinal dehydrogenase 4; EC 1.2.1.32 from Mus musculus
Q8BH00: aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) from Mus musculus

27% id,
98% cov

ALD5 / P40047: aldehyde dehydrogenase, mitochondrial (EC 1.2.1.4; EC 1.2.1.3) from Saccharomyces cerevisiae

27% id,
98% cov

nbaE / Q83V33: 2-aminomuconate 6-semialdehyde dehydrogenase (EC 1.2.1.32) from Pseudomonas fluorescens
Q83V33: aminomuconate-semialdehyde dehydrogenase (EC 1.2.1.32) from Pseudomonas fluorescens

29% id,
88% cov

More...

BT4424: sorbitol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

26% id,
98% cov

BT3617: sorbitol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ADH_CUPNH / Q0KDL6: Alcohol dehydrogenase; EC 1.1.1.1; EC 1.1.1.4; EC 1.2.1.3 from Cupriavidus necator

25% id,
98% cov

BT3767: lactaldehyde reductase (NCBI ptt file)
is similar to:
PaperBLAST

ADHE_STRPN / A0A0H2URT2: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae

37% id,
43% cov

ADHE_STRP2 / A0A0H2ZM56: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae

37% id,
43% cov

ADHE_CLOAB / P33744: Aldehyde-alcohol dehydrogenase; AAD; EC 1.1.1.1; EC 1.2.1.3 from Clostridium acetobutylicum

31% id,
46% cov

BT0535: iron-containing alcohol dehydrogenase (NCBI ptt file)
is similar to:
PaperBLAST

ADHE_STRPN / A0A0H2URT2: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae

27% id,
40% cov

ADHE_STRP2 / A0A0H2ZM56: Aldehyde-alcohol dehydrogenase; EC 1.1.1.1; EC 1.2.1.3 from Streptococcus pneumoniae

27% id,
40% cov

BT3755: acetyl-coenzyme A synthetase (NCBI ptt file)
is similar to:
PaperBLAST

LYS2_SCHPO / P40976: L-2-aminoadipate reductase; Alpha-aminoadipate reductase; Alpha-AR; L-aminoadipate-semialdehyde dehydrogenase; EC 1.2.1.31; EC 1.2.1.95 from Schizosaccharomyces pombe
lys1 / RF|NP_594314.1: aminoadipate-semialdehyde dehydrogenase; EC 1.2.1.31 from Schizosaccharomyces pombe

23% id,
40% cov

LYS2_YEAST / P07702: L-2-aminoadipate reductase; Alpha-aminoadipate reductase; Alpha-AR; L-aminoadipate-semialdehyde dehydrogenase; EC 1.2.1.31; EC 1.2.1.95 from Saccharomyces cerevisiae

24% id,
35% cov

Q8NJ21: L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31) from Kluyveromyces lactis

22% id,
32% cov

BT2154: putative long-chain-fatty-acid--CoA ligase (NCBI ptt file)
is similar to:
PaperBLAST

B2HN69: carboxylate reductase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum

26% id,
32% cov

BT3395: putative acetylglutamate kinase (NCBI ptt file)
is similar to:
PaperBLAST

ARG56_SCHPO / P31318: Protein arg11, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe
arg11 / GI|1204210: N-acetyl-gamma-glutamyl-phosphate reductase/acetylglutamate kinase; EC 1.2.1.38; EC 2.7.2.8 from Schizosaccharomyces pombe

34% id,
21% cov

ARG56_YEAST / Q01217: Protein ARG5,6, mitochondrial; EC 1.2.1.38; EC 2.7.2.8 from Saccharomyces cerevisiae

29% id,
22% cov

BT3550: putative long-chain-fatty-acid--CoA ligase (NCBI ptt file)
is similar to:
PaperBLAST

B2HN69: carboxylate reductase (NADP+) (EC 1.2.1.30) from Mycobacterium marinum

27% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4875314-4876981 (frame -3) on 241
is similar to:
PaperBLAST

Q8NJ21: L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31) from Kluyveromyces lactis
Also see hits to annotated proteins above

23% id,
40% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory