Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 25 curated entries in PaperBLAST's database that match '1.4.4.2'.

These curated entries have 18 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1147: glycine dehydrogenase [decarboxylating] (NCBI ptt file)
is similar to:
PaperBLAST

PS417_22360: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas simiae

54% id,
98% cov

AO353_03500: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

53% id,
98% cov

Pf6N2E2_5558: Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Pseudomonas fluorescens

53% id,
98% cov

More...

BT2519: putative glycine cleavage system H protein (NCBI ptt file)
is similar to:
PaperBLAST

P23434: glycine cleavage system (subunit 3/4) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Homo sapiens

47% id,
69% cov

P25855: glycine cleavage system (subunit 3/5) (EC 1.4.1.27); glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) from Arabidopsis thaliana

42% id,
70% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory