Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 14 curated entries in PaperBLAST's database that match '1.5.1.34' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1155: Na+-translocating NADH-quinone reductase subunit (NCBI ptt file)
is similar to:
PaperBLAST

Hmp / b2552: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli
hmp / P24232: nitric oxide dioxygenase (EC 1.14.12.17; EC 1.5.1.34) from Escherichia coli

25% id,
53% cov

BT1316: putative NADH dehydrogenase/NAD(P)H nitroreductase (NCBI ptt file)
is similar to:
PaperBLAST

NFSB_ECOLI / P38489: Oxygen-insensitive NAD(P)H nitroreductase; Dihydropteridine reductase; FMN-dependent nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli
Ntr / b0578: NAD(P)H nitroreductase NfsB (EC 1.5.1.34) from Escherichia coli
nfnB / PDB|1OO5_A: oxygen-insensitive NAD(P)H nitroreductase; EC 1.-.-.-; EC 1.5.1.34 from Escherichia coli
nfsB / P38489: NAD(P)H-dependent nitroreductase NfsB (EC 1.6.5.2; EC 1.5.1.34) from Escherichia coli

36% id,
30% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory