Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 47 curated entries in PaperBLAST's database that match '2.1.1.13'.

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0180: 5-methyltetrahydrofolate-homocysteine methyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

METH_ECOLI / P13009: Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli
MetH / b4019: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli
metH: methionine synthase; EC 2.1.1.13 from Escherichia coli
metH / P13009: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli

57% id,
74% cov

METH_RAT / Q9Z2Q4: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Rattus norvegicus
Q9Z2Q4: methionine synthase (EC 2.1.1.13) from Rattus norvegicus

54% id,
74% cov

METH_HUMAN / Q99707: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Homo sapiens
MTR / Q99707: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Homo sapiens
Q99707: methionine synthase (EC 2.1.1.13) from Homo sapiens

54% id,
73% cov

More...

BT0340: trimethylamine corrinoid protein 2 (TCP 2) (NCBI ptt file)
is similar to:
PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

45% id,
92% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

41% id,
25% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

40% id,
25% cov

More...

BT2972: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

staMB / Q83WF7: 3'-O-demethyl-staurosporine methyltransferase (EC 2.1.1.139) from Streptomyces sp.

26% id,
61% cov

BT1855: putative methyl transferase (NCBI ptt file)
is similar to:
PaperBLAST

ARSM_CLOSP / A0A0D3MJQ5: Arsenite methyltransferase; EC 2.1.1.137 from Clostridium sp.
A0A0D3MJQ5: arsenite methyltransferase (EC 2.1.1.137) from Clostridium sp.

26% id,
54% cov

ARSM_RHOPA / Q6N3Y0: Arsenite methyltransferase; As(III) AdoMet methyltransferase; EC 2.1.1.137 from Rhodopseudomonas palustris
arsM / Q6N3Y0: arsenite methyltransferase (EC 2.1.1.137) from Rhodopseudomonas palustris

27% id,
52% cov

staMB / Q83WF7: 3'-O-demethyl-staurosporine methyltransferase (EC 2.1.1.139) from Streptomyces sp.

32% id,
36% cov

BT4216: ubiquinone/menaquinone biosynthesis methyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

staMB / Q83WF7: 3'-O-demethyl-staurosporine methyltransferase (EC 2.1.1.139) from Streptomyces sp.

25% id,
54% cov

BT1409: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

PGA1_c13370: Methionine synthase component, methyltransferase domain (EC:2.1.1.13) from Phaeobacter inhibens

23% id,
58% cov

BT0838: putative RNA methyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

ARSM_CLOSP / A0A0D3MJQ5: Arsenite methyltransferase; EC 2.1.1.137 from Clostridium sp.
A0A0D3MJQ5: arsenite methyltransferase (EC 2.1.1.137) from Clostridium sp.

28% id,
43% cov

BT0249: 5-methyltetrahydrofolate--homocysteine methyltransferase or methionine synthase (NCBI ptt file)
is similar to:
PaperBLAST

METH_ECOLI / P13009: Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli
MetH / b4019: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli
metH: methionine synthase; EC 2.1.1.13 from Escherichia coli
metH / P13009: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli

41% id,
23% cov

METH_RAT / Q9Z2Q4: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Rattus norvegicus
Q9Z2Q4: methionine synthase (EC 2.1.1.13) from Rattus norvegicus

36% id,
24% cov

METH_HUMAN / Q99707: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Homo sapiens
MTR / Q99707: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Homo sapiens
Q99707: methionine synthase (EC 2.1.1.13) from Homo sapiens

36% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5552884-5553660 (frame -1) on 241
is similar to:
PaperBLAST

staMB / Q83WF7: 3'-O-demethyl-staurosporine methyltransferase (EC 2.1.1.139) from Streptomyces sp.
Also see hits to annotated proteins above

25% id,
60% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory