Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 98 curated entries in PaperBLAST's database that match '2.1.2.1'.

These curated entries have 64 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0738: serine hydroxymethyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus
Q5HE87: glycine hydroxymethyltransferase (EC 2.1.2.1) from Staphylococcus aureus

57% id,
99% cov

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

57% id,
97% cov

GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis

57% id,
98% cov

More...

BT0698: 3-methyl-2-oxobutanoate hydroxymethyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

PANB_CORGL / Q9X712: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Corynebacterium glutamicum

50% id,
99% cov

PANB_MYCTU / P9WIL7: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Mycobacterium tuberculosis

45% id,
95% cov

PANB_THEKO / Q5JCY6: 3-methyl-2-oxobutanoate hydroxymethyltransferase; Ketopantoate hydroxymethyltransferase; KPHMT; EC 2.1.2.11 from Thermococcus kodakarensis

46% id,
92% cov

More...

BT4584: putative aminomethyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis

38% id,
97% cov

GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli
GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli
gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli
gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli

37% id,
97% cov

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

38% id,
96% cov

More...

BT3945: methionyl-tRNA formyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

ARNA_SALTY / O52325: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Salmonella typhimurium

26% id,
46% cov

ARNA_YERPS / Q93PD8: Bifunctional polymyxin resistance protein ArnA; EC 2.1.2.13; EC 1.1.1.305 from Yersinia pseudotuberculosis

28% id,
42% cov

ARNA_ECOLI / P77398: Bifunctional polymyxin resistance protein ArnA; Polymyxin resistance protein PmrI; EC 2.1.2.13; EC 1.1.1.305 from Escherichia coli
ArnA / b2255: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
arnA / P77398: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
P77398: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli
A0A140N587: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli

25% id,
46% cov

BT3360: phosphoribosylglycinamide formyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

ARNA_ECOLI / P77398: Bifunctional polymyxin resistance protein ArnA; Polymyxin resistance protein PmrI; EC 2.1.2.13; EC 1.1.1.305 from Escherichia coli
ArnA / b2255: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
arnA / P77398: fused UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronate dehydrogenase (EC 2.1.2.13; EC 1.1.1.305) from Escherichia coli
P77398: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli
A0A140N587: UDP-glucuronic acid dehydrogenase (UDP-4-keto-hexauronic acid decarboxylating) (EC 1.1.1.305); UDP-4-amino-4-deoxy-L-arabinose formyltransferase (EC 2.1.2.13) from Escherichia coli

30% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory