Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 71 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0738: serine hydroxymethyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

GLYA_STAAC / Q5HE87: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Staphylococcus aureus
Q5HE87: glycine hydroxymethyltransferase (EC 2.1.2.1) from Staphylococcus aureus

57% id,
99% cov

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

57% id,
97% cov

GLYA_BACSU / P39148: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Bacillus subtilis

57% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory