Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 39 curated entries in PaperBLAST's database that match '2.4.2.17' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0200: ATP phosphoribosyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

HIS1_SALTY / P00499: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Salmonella typhimurium

47% id,
98% cov

Q9PM78: ATP phosphoribosyltransferase (EC 2.4.2.17) from Campylobacter jejuni
Q5HSJ4: ATP phosphoribosyltransferase (EC 2.4.2.17) from Campylobacter jejuni

46% id,
98% cov

HIS1_ECOLI / P60757: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Escherichia coli
HisG / b2019: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli
hisG / P60757: ATP phosphoribosyltransferase (EC 2.4.2.17) from Escherichia coli

46% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

215052-215939 (frame +3) on 241
is similar to:
PaperBLAST

HIS1_SALTY / P00499: ATP phosphoribosyltransferase; ATP-PRT; ATP-PRTase; EC 2.4.2.17 from Salmonella typhimurium
Also see hits to annotated proteins above

46% id,
100% cov

G7JFL4: ATP phosphoribosyltransferase (EC 2.4.2.17) from Medicago truncatula
Also see hits to annotated proteins above

29% id,
87% cov

Q56UT2: ATP phosphoribosyltransferase (EC 2.4.2.17) from Odontarrhena lesbiaca
Also see hits to annotated proteins above

30% id,
79% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory