Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 80 curated entries in PaperBLAST's database that match '2.5.1.47'.

These curated entries have 59 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3080: cysteine synthase A (NCBI ptt file)
is similar to:
PaperBLAST

CYSK_MYCTU / P9WP55: O-acetylserine sulfhydrylase; OAS sulfhydrylase; OASS; Cysteine synthase A; CSase A; O-acetylserine (thiol)-lyase A; OAS-TL A; O-acetylserine-specific cysteine synthase; Sulfide-dependent cysteine synthase; EC 2.5.1.47 from Mycobacterium tuberculosis
P9WP55: cysteine synthase (EC 2.5.1.47) from Mycobacterium tuberculosis

62% id,
98% cov

CYSK_BACSU / P37887: Cysteine synthase; CSase; O-acetylserine (thiol)-lyase; OAS-TL; Superoxide-inducible protein 11; SOI11; EC 2.5.1.47 from Bacillus subtilis
P37887: cysteine synthase (EC 2.5.1.47) from Bacillus subtilis

61% id,
100% cov

A8YBP8: cysteine synthase (EC 2.5.1.47) from Microcystis aeruginosa

60% id,
97% cov

More...

BT1852: cysteine synthase A (NCBI ptt file)
is similar to:
PaperBLAST

CYSK_MYCTU / P9WP55: O-acetylserine sulfhydrylase; OAS sulfhydrylase; OASS; Cysteine synthase A; CSase A; O-acetylserine (thiol)-lyase A; OAS-TL A; O-acetylserine-specific cysteine synthase; Sulfide-dependent cysteine synthase; EC 2.5.1.47 from Mycobacterium tuberculosis
P9WP55: cysteine synthase (EC 2.5.1.47) from Mycobacterium tuberculosis

56% id,
98% cov

A8YBS4: cysteine synthase (EC 2.5.1.47) from Microcystis aeruginosa

56% id,
96% cov

A8YBP8: cysteine synthase (EC 2.5.1.47) from Microcystis aeruginosa

55% id,
97% cov

More...

BT2387: O-acetylhomoserine (thiol)-lyase (NCBI ptt file)
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

47% id,
98% cov

BT1923: O-acetylhomoserine (thiol)-lyase (NCBI ptt file)
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

44% id,
93% cov

BT_4664: tryptophan synthase subunit beta (RefSeq)
is similar to:
PaperBLAST

Q767A2: cysteine synthase (EC 2.5.1.47) from Spinacia oleracea

33% id,
30% cov

A3RM03: cysteine synthase (EC 2.5.1.47) from Glycine max

32% id,
26% cov

CYSK_CITLA / Q43317: Cysteine synthase; CSase; Beta-PA/CSase; Beta-pyrazolylalanine synthase; L-mimosine synthase; O-acetylserine (thiol)-lyase; OAS-TL; O-acetylserine sulfhydrylase; EC 2.5.1.47; EC 2.5.1.51; EC 4.2.1.50; EC 2.5.1.52 from Citrullus lanatus

32% id,
26% cov

More...

BT3409: aminotransferase, putative cysteine desulfurase (NCBI ptt file)
is similar to:
PaperBLAST

CYSD_YEAST / P06106: Homocysteine/cysteine synthase; O-acetylserine/O-acetylhomoserine sulfhydrylase; OAS-OAH SHLase; OAS-OAH sulfhydrylase; EC 2.5.1.47; EC 2.5.1.49 from Saccharomyces cerevisiae

25% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory