Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 37 curated entries in PaperBLAST's database that match '2.6.1.19' as complete word(s).

These curated entries have 26 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3758: acetylornithine aminotransferase (NCBI ptt file) is similar to:	PaperBLAST
GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli	37% id, 91% cov
gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator	35% id, 94% cov
Sama_2636: gamma-aminobutyrate transaminase (EC 2.6.1.19) from Shewanella amazonensis	34% id, 95% cov
gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens	33% id, 93% cov
PUUE_ECOLI / P50457: 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli	33% id, 89% cov
A5H0J6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Lachancea kluyveri	28% id, 92% cov
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum	27% id, 92% cov
A5H0J5: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); alanine transaminase (EC 2.6.1.2) from Lachancea kluyveri	25% id, 91% cov
Q94CE5: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Arabidopsis thaliana	25% id, 84% cov
Q84P54: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum	29% id, 70% cov
GABAT_KLULA / Q6CJ86: 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Kluyveromyces lactis	30% id, 66% cov
GABAT_YEAST / P17649: 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Saccharomyces cerevisiae UGA1 / P17649: 4-aminobutyrate aminotransferase (EC 2.6.1.19) from Saccharomyces cerevisiae P17649: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Saccharomyces cerevisiae	30% id, 59% cov
gatA / GI\|2346: 4-aminobutyrate aminotransferase; EC 2.6.1.19 from Emericella nidulans	28% id, 58% cov
Sama_2643: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Shewanella amazonensis	31% id, 52% cov
P61922: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Mus musculus	28% id, 58% cov
GABT_PIG / P80147: 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Sus scrofa P80147: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Sus scrofa	28% id, 58% cov
GABT_HUMAN / P80404: 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Homo sapiens P80404: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Homo sapiens	28% id, 58% cov
BPHYT_RS23155: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Burkholderia phytofirmans	31% id, 50% cov
GABT_RAT / P50554: 4-aminobutyrate aminotransferase, mitochondrial; beta-AlaAT I; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Rattus norvegicus	27% id, 58% cov
AO353_08585: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens	28% id, 53% cov
Pf6N2E2_4512: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens	27% id, 53% cov
AO356_13150: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas fluorescens	27% id, 53% cov
PS417_27130: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Pseudomonas simiae	27% id, 53% cov
Q84P52: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum	29% id, 47% cov
More...

BT1442: adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file) is similar to:	PaperBLAST
Sama_2636: gamma-aminobutyrate transaminase (EC 2.6.1.19) from Shewanella amazonensis	31% id, 91% cov
Sama_2643: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Shewanella amazonensis	30% id, 93% cov
gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator	30% id, 94% cov
PUUE_ECOLI / P50457: 4-aminobutyrate aminotransferase PuuE; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; EC 2.6.1.19 from Escherichia coli GoaG / b1302: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli puuE / P50457: 4-aminobutyrate aminotransferase PuuE (EC 2.6.1.19; EC 2.6.1.48) from Escherichia coli	30% id, 94% cov
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum	29% id, 94% cov
BPHYT_RS23155: Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) from Burkholderia phytofirmans	30% id, 90% cov
gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens	28% id, 93% cov
Q84P54: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum	30% id, 88% cov
GABT_ECOLI / P22256: 4-aminobutyrate aminotransferase GabT; 5-aminovalerate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; Glutamate:succinic semialdehyde transaminase; L-AIBAT; EC 2.6.1.19; EC 2.6.1.48 from Escherichia coli GabT / b2662: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli gabT / P22256: 4-aminobutyrate aminotransferase GabT (EC 2.6.1.19; EC 2.6.1.48; EC 2.6.1.11) from Escherichia coli	31% id, 79% cov
GABAT_YEAST / P17649: 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Saccharomyces cerevisiae UGA1 / P17649: 4-aminobutyrate aminotransferase (EC 2.6.1.19) from Saccharomyces cerevisiae P17649: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Saccharomyces cerevisiae	25% id, 76% cov
GABAT_KLULA / Q6CJ86: 4-aminobutyrate aminotransferase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; EC 2.6.1.19 from Kluyveromyces lactis	25% id, 76% cov
A5H0J5: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); alanine transaminase (EC 2.6.1.2) from Lachancea kluyveri	31% id, 58% cov
gatA / GI\|2346: 4-aminobutyrate aminotransferase; EC 2.6.1.19 from Emericella nidulans	27% id, 63% cov
P61922: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Mus musculus	23% id, 71% cov
GABT_HUMAN / P80404: 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Homo sapiens P80404: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Homo sapiens	26% id, 55% cov
GABT_PIG / P80147: 4-aminobutyrate aminotransferase, mitochondrial; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Sus scrofa P80147: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Sus scrofa	25% id, 55% cov
GABT_RAT / P50554: 4-aminobutyrate aminotransferase, mitochondrial; beta-AlaAT I; (S)-3-amino-2-methylpropionate transaminase; GABA aminotransferase; GABA-AT; Gamma-amino-N-butyrate transaminase; GABA transaminase; GABA-T; L-AIBAT; EC 2.6.1.19; EC 2.6.1.22 from Rattus norvegicus	24% id, 55% cov
A5H0J6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Lachancea kluyveri	28% id, 30% cov
More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4878480-4879628 (frame -2) on 241 is similar to:	PaperBLAST
gabT / Q0K2K2: 4-aminobutyrate aminotransferase monomer (EC 2.6.1.19) from Cupriavidus necator Q0K2K2: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Cupriavidus necator Also see hits to annotated proteins above	35% id, 99% cov
Sama_2636: gamma-aminobutyrate transaminase (EC 2.6.1.19) from Shewanella amazonensis Also see hits to annotated proteins above	34% id, 99% cov
gabT / Q4KKA1: 4-aminobutyrate transaminase subunit (EC 2.6.1.19) from Pseudomonas fluorescens Also see hits to annotated proteins above	34% id, 97% cov
A5H0J6: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19) from Lachancea kluyveri Also see hits to annotated proteins above	27% id, 95% cov
A5H0J5: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); alanine transaminase (EC 2.6.1.2) from Lachancea kluyveri Also see hits to annotated proteins above	25% id, 93% cov
More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory