Curated BLAST for Genomes


Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 15 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3892: branched-chain amino acid aminotransferase (NCBI ptt file)
is similar to:

IlvE / b3770: branched-chain-amino-acid aminotransferase (EC; EC; EC; EC; EC from Escherichia coli

29% id,
97% cov

BT3720: putative aspartate aminotransferase (NCBI ptt file)
is similar to:

ISS1_ARATH / Q9C969: Aromatic aminotransferase ISS1; Methionine aminotransferase ISS1; Phenylalanine aminotransferase ISS1; Protein INDOLE SEVERE SENSITIVE 1; Protein REVERSAL OF SAV3 PHENOTYPE 1; Tryptophan aminotransferase ISS1; Tyrosine aminotransferase ISS1; EC; EC; EC from Arabidopsis thaliana
ISS1 / Q9C969: aromatic aminotransferase ISS1 (EC from Arabidopsis thaliana

24% id,
95% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory