Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 6 curated entries in PaperBLAST's database that match '2.6.1.36'.

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3758: acetylornithine aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

CA265_RS14455: L-lysine 6-transaminase (EC 2.6.1.36) from Pedobacter sp.

30% id,
95% cov

P9WQ77: L-lysine 6-transaminase (EC 2.6.1.36) from Mycobacterium tuberculosis

29% id,
91% cov

lat / Q01767: lysine ε-aminotransferase (EC 2.6.1.36) from Streptomyces clavuligerus

28% id,
90% cov

More...

BT1442: adenosylmethionine-8-amino-7-oxononanoate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

ORNAT_THEKO / Q5JEW1: Ornithine aminotransferase; Orn-AT; Lysine aminotransferase; Lys-AT; EC 2.6.1.13; EC 2.6.1.36 from Thermococcus kodakarensis

28% id,
90% cov

CA265_RS14455: L-lysine 6-transaminase (EC 2.6.1.36) from Pedobacter sp.

24% id,
81% cov

A4F7V1: L-lysine 6-transaminase (EC 2.6.1.36) from Saccharopolyspora erythraea

25% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4878480-4879628 (frame -2) on 241
is similar to:
PaperBLAST

CA265_RS14455: L-lysine 6-transaminase (EC 2.6.1.36) from Pedobacter sp.
Also see hits to annotated proteins above

30% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory