Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 101 curated entries in PaperBLAST's database that match '2.7.1.13'.

These curated entries have 72 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1880: tetraacyldisaccharide 4'-kinase (NCBI ptt file)
is similar to:
PaperBLAST

LPXK_ARATH / Q8LEA0: Probable tetraacyldisaccharide 4'-kinase, mitochondrial; Protein LIPID X 4'-kinase; AtLpxK; EC 2.7.1.130 from Arabidopsis thaliana

28% id,
92% cov

O67572: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Aquifex aeolicus

42% id,
60% cov

LPXK_ECOLI / P27300: Tetraacyldisaccharide 4'-kinase; Lipid A 4'-kinase; EC 2.7.1.130 from Escherichia coli
YcaH / b0915: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli
lpxK / P27300: tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) from Escherichia coli

30% id,
57% cov

BT1757: fructokinase (NCBI ptt file)
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

26% id,
85% cov

BT0488: 2-dehydro-3-deoxygluconokinase (NCBI ptt file)
is similar to:
PaperBLAST

Q4KD57: 2-ketogluconokinase (EC 2.7.1.13) from Pseudomonas fluorescens

23% id,
75% cov

BT1595: transcription termination factor rho (NCBI ptt file)
is similar to:
PaperBLAST

P54675: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Dictyostelium discoideum

25% id,
10% cov

BT0315: hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

P54674: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Dictyostelium discoideum

28% id,
7% cov

BT3819: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

P54674: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Dictyostelium discoideum

22% id,
9% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

378815-380188 (frame +2) on 241
is similar to:
PaperBLAST

P54674: phosphatidylinositol 3-kinase (EC 2.7.1.137) from Dictyostelium discoideum
Also see hits to annotated proteins above

32% id,
10% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory