Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 13 curated entries in PaperBLAST's database that match '2.7.1.178'.

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0488: 2-dehydro-3-deoxygluconokinase (NCBI ptt file)
is similar to:
PaperBLAST

kdgK / Q9WXS2: 2-keto-3-deoxygluconate kinase (EC 2.7.1.178) from Thermotoga maritima

56% id,
100% cov

KDGK1_HALVD / D4GSE6: 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase; 2-dehydro-3-deoxyglucono/galactono-kinase; 2-keto-3-deoxygluconate/2-keto-3-deoxygalactonate kinase; KDG kinase; KDGK-1; EC 2.7.1.178 from Haloferax volcanii
D4GSE6: 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Haloferax volcanii

35% id,
98% cov

D4GR05: 6-phosphofructokinase (EC 2.7.1.11); 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygalactonokinase (EC 2.7.1.58) from Haloferax volcanii

34% id,
99% cov

BT3576: putative ribokinase (NCBI ptt file)
is similar to:
PaperBLAST

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

26% id,
86% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

26% id,
81% cov

BT2799: putative PfkB family carbohydrate kinase (NCBI ptt file)
is similar to:
PaperBLAST

kdgK / P45416: 2-dehydro-3-deoxy-D-gluconate kinase (EC 2.7.1.178) from Dickeya dadantii

26% id,
83% cov

YhjI / b3526: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178; EC 2.7.1.45) from Escherichia coli
kdgK / P37647: 2-dehydro-3-deoxygluconokinase (EC 2.7.1.178) from Escherichia coli

24% id,
83% cov

BT2803: ribokinase (NCBI ptt file)
is similar to:
PaperBLAST

KDGK1_HALVD / D4GSE6: 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase; 2-dehydro-3-deoxyglucono/galactono-kinase; 2-keto-3-deoxygluconate/2-keto-3-deoxygalactonate kinase; KDG kinase; KDGK-1; EC 2.7.1.178 from Haloferax volcanii
D4GSE6: 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178); 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) from Haloferax volcanii

23% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4628826-4629725 (frame -2) on 241
is similar to:
PaperBLAST

KDGK_SACS2 / Q97U29: 2-dehydro-3-deoxygluconokinase/2-dehydro-3-deoxygalactonokinase; 2-dehydro-3-deoxyglucono/galactono-kinase; 2-keto-3-deoxy-galactonokinase; 2-keto-3-deoxygluconokinase; 3-deoxy-2-oxo-D-gluconate kinase; KDG kinase; KDGal kinase; EC 2.7.1.178 from Saccharolobus solfataricus
kdgK / Q97U29: 2-dehydro-3-deoxyglucono/2-dehydro-3-deoxygalactonokinase monomer (EC 2.7.1.178) from Saccharolobus solfataricus
Q97U29: 2-dehydro-3-deoxyglucono/galactono-kinase (EC 2.7.1.178) from Saccharolobus solfataricus

24% id,
88% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory