Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 36 curated entries in PaperBLAST's database that match '2.7.1.30' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT4423: xylulose kinase (NCBI ptt file)
is similar to:
PaperBLAST

P74260: glycerol kinase (EC 2.7.1.30) from Synechocystis sp.

27% id,
91% cov

D0VZG4: glycerol kinase (EC 2.7.1.30) from Cellulomonas sp.

24% id,
96% cov

GLPK_RAT / Q63060: Glycerol kinase; Glycerokinase; ATP-stimulated glucocorticoid-receptor translocation promoter; ASTP; ATP:glycerol 3-phosphotransferase; EC 2.7.1.30 from Rattus norvegicus

25% id,
89% cov

More...

BT0792: xylulose kinase (xylulokinase) (NCBI ptt file)
is similar to:
PaperBLAST

SM_b21009: Glycerol kinase (EC 2.7.1.30) from Sinorhizobium meliloti

23% id,
92% cov

BT3763: rhamnulose kinase/L-fuculose kinase (NCBI ptt file)
is similar to:
PaperBLAST

GLPK_TRYBB / Q9NJP9: Glycerol kinase, glycosomal; GK; Glycerokinase; ATP:glycerol 3-phosphotransferase; EC 2.7.1.30 from Trypanosoma brucei
Q9NJP9: glycerol kinase (EC 2.7.1.30) from Trypanosoma brucei
D3KVM4: glycerol kinase (EC 2.7.1.30) from Trypanosoma brucei
D3KVM3: glycerol kinase (EC 2.7.1.30) from Trypanosoma brucei

24% id,
73% cov

B0I530: glycerol kinase (EC 2.7.1.30) from Trypanosoma vivax

23% id,
74% cov

Q75T26: glycerol kinase (EC 2.7.1.30) from Trypanosoma congolense

23% id,
22% cov

BT1275: L-fuculose kinase (NCBI ptt file)
is similar to:
PaperBLAST

Q6ZS86: glycerol kinase (EC 2.7.1.30) from Homo sapiens

21% id,
57% cov

P74260: glycerol kinase (EC 2.7.1.30) from Synechocystis sp.

44% id,
14% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5825569-5827098 (frame +1) on 241
is similar to:
PaperBLAST

GLPK_ENTFA / O34154: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Enterococcus faecalis

26% id,
97% cov

GLPK_ENTCA / O34153: Glycerol kinase; ATP:glycerol 3-phosphotransferase; Glycerokinase; GK; EC 2.7.1.30 from Enterococcus casseliflavus

26% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory