Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 17 curated entries in PaperBLAST's database that match '3.2.1.108' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3340: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

35% id,
99% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

34% id,
98% cov

BT3293: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

36% id,
93% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

33% id,
99% cov

BT4050: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

33% id,
99% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

35% id,
69% cov

BT4241: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

33% id,
98% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

32% id,
92% cov

lacM / Q19R71: beta-galactosidase small subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

25% id,
96% cov

BT3179: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

33% id,
98% cov

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

33% id,
97% cov

BT0993: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

34% id,
97% cov

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

37% id,
40% cov

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

32% id,
41% cov

BT1626: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

33% id,
98% cov

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

32% id,
97% cov

BT2191: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

32% id,
98% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

37% id,
71% cov

BT4156: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

28% id,
79% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

30% id,
38% cov

BT1768: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

lacL / Q19R72: beta-galactosidase large subunit (EC 3.2.1.108; EC 3.2.1.23) from Limosilactobacillus reuteri

23% id,
68% cov

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

25% id,
51% cov

BT0992: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

30% id,
50% cov

BT0290: beta-galactosidase precursor (NCBI ptt file)
is similar to:
PaperBLAST

lacA / P29853: β-galactosidase (EC 3.2.1.23; EC 3.2.1.108) from Aspergillus niger

33% id,
34% cov

bga1 / Q70SY0: β-galactosidase (EC 3.2.1.23; EC 3.2.1.108) from Hypocrea jecorina

35% id,
18% cov

BT3654: beta-galactosidase precursor (NCBI ptt file)
is similar to:
PaperBLAST

lacA / P29853: β-galactosidase (EC 3.2.1.23; EC 3.2.1.108) from Aspergillus niger

28% id,
40% cov

bga1 / Q70SY0: β-galactosidase (EC 3.2.1.23; EC 3.2.1.108) from Hypocrea jecorina

35% id,
18% cov

BT0983: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

24% id,
44% cov

BT3114: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

23% id,
45% cov

BT4181: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

21% id,
34% cov

BT2190: beta-galactosidase (NCBI ptt file)
is similar to:
PaperBLAST

LacZ / b0344: β-galactosidase (EC 3.2.1.108) from Escherichia coli
lacZ / P00722: β-galactosidase (EC 3.2.1.108) from Escherichia coli

28% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory