Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 163 curated entries in PaperBLAST's database that match '3.5.3.1'.

These curated entries have 116 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0876: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

Q9ZN18: agmatine deiminase (EC 3.5.3.12) from Helicobacter pylori

49% id,
98% cov

aguA / O24890: agmatine deiminase (EC 3.5.3.12) from Helicobacter pylori

49% id,
98% cov

Q0P9V0: agmatine deiminase (EC 3.5.3.12) from Campylobacter jejuni

40% id,
95% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory