Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 56 curated entries in PaperBLAST's database that match '4.1.1.19' as complete word(s).

These curated entries have 40 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3394: putative arginine decarboxylase (NCBI ptt file)
is similar to:
PaperBLAST

A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei

90% id,
100% cov

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

47% id,
93% cov

Q8ZHG8: arginine decarboxylase (EC 4.1.1.19) from Yersinia pestis

46% id,
94% cov

More...

BT1374: diaminopimelate decarboxylase (NCBI ptt file)
is similar to:
PaperBLAST

A0A076IP90: arginine decarboxylase (EC 4.1.1.19) from Phocaeicola dorei

23% id,
61% cov

speA / Q9HUX1: arginine decarboxylase, biosynthetic (EC 4.1.1.19) from Pseudomonas aeruginosa
Q9HUX1: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa
A0A0H2ZHZ8: arginine decarboxylase (EC 4.1.1.19) from Pseudomonas aeruginosa

27% id,
51% cov

P74576: arginine decarboxylase (EC 4.1.1.19) from Synechocystis sp.

24% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory