Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 17 curated entries in PaperBLAST's database that match '4.1.2.14'.

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0489: putative gluconate aldolase (NCBI ptt file)
is similar to:
PaperBLAST

A0A0B6VQ18: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Flavobacterium sp.

52% id,
100% cov

CA265_RS19860: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Pedobacter sp.

35% id,
99% cov

D4GV57: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Haloferax volcanii

32% id,
99% cov

More...

BT2814: dihydrodipicolinate synthase (NCBI ptt file)
is similar to:
PaperBLAST

O54288: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14); 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Saccharolobus solfataricus

25% id,
97% cov

BT0895: dihydrodipicolinate synthase (NCBI ptt file)
is similar to:
PaperBLAST

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.14; EC 4.1.2.51; EC 4.1.2.-; EC 4.1.2.21 from Picrophilus torridus

33% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory