Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 88 curated entries in PaperBLAST's database that match '4.1.2.4'.

These curated entries have 56 distinct sequences.

Running ublast with E ≤ 0.01

Found 10 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0738: serine hydroxymethyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

P0A825: glycine hydroxymethyltransferase (EC 2.1.2.1); low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

56% id,
97% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

57% id,
95% cov

GLYA_METJA / Q58992: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-allo-threonine aldolase; EC 2.1.2.-; EC 4.1.2.49 from Methanocaldococcus jannaschii

40% id,
94% cov

BT4425: deoxyribose-phosphate aldolase (NCBI ptt file)
is similar to:
PaperBLAST

DEOC_BACSU / P39121: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Bacillus subtilis

54% id,
96% cov

C7E719: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Paenibacillus sp.

53% id,
96% cov

DEOC_THEKO / Q877I0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Thermococcus kodakarensis
Q877I0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Thermococcus kodakarensis

52% id,
98% cov

More...

BT1815: low-specificity L-threonine aldolase (NCBI ptt file)
is similar to:
PaperBLAST

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

39% id,
97% cov

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

37% id,
99% cov

LTAE_ECOLI / P75823: Low specificity L-threonine aldolase; Low specificity L-TA; EC 4.1.2.48 from Escherichia coli
LtaA / b0870: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.5; EC 4.1.2.26; EC 4.1.2.49) from Escherichia coli
ltaE / P75823: low-specificity L-threonine aldolase (EC 4.1.2.48; EC 4.1.2.26) from Escherichia coli
P75823: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

26% id,
97% cov

More...

BT3263: putative deoxyribose-phosphate aldolase (NCBI ptt file)
is similar to:
PaperBLAST

DEOC_ECOLI / P0A6L0: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Escherichia coli
Tlr / b4381: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli
deoC / P0A6L0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli
P0A6L0: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Escherichia coli

42% id,
90% cov

Q7WT44: deoxyribose-phosphate aldolase (EC 4.1.2.4) from Klebsiella pneumoniae

41% id,
90% cov

DEOC_SALTY / Q8ZJV8: Deoxyribose-phosphate aldolase; DERA; 2-deoxy-D-ribose 5-phosphate aldolase; Phosphodeoxyriboaldolase; Deoxyriboaldolase; EC 4.1.2.4 from Salmonella typhimurium

40% id,
90% cov

More...

BT1691: fructose-bisphosphate aldolase (NCBI ptt file)
is similar to:
PaperBLAST

KBAY_ECOLX / Q9KIP8: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli

35% id,
100% cov

KBAY_ECOLI / P0AB74: D-tagatose-1,6-bisphosphate aldolase subunit KbaY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Ketose 1,6-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
Kba / b3137: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli
kbaY / RF|NP_417606: tagatose-bisphosphate aldolase; EC 4.1.2.40 from Escherichia coli
kbaY / P0AB76: D-tagatose-1,6-bisphosphate aldolase subunit KbaY (EC 4.1.2.40) from Escherichia coli
kbaY / P0AB74: tagatose-1,6-bisphosphate aldolase 1 (EC 4.1.2.40) from Escherichia coli

35% id,
100% cov

GATY_KLEOX / Q8VS16: D-tagatose-1,6-bisphosphate aldolase subunit GatY; TBPA; TagBP aldolase; D-tagatose-bisphosphate aldolase class II; Tagatose-bisphosphate aldolase; EC 4.1.2.40 from Klebsiella oxytoca
Q8VS16: tagatose-bisphosphate aldolase (EC 4.1.2.40) from Klebsiella oxytoca

35% id,
99% cov

More...

BT3946: ribulose-phosphate 3-epimerase (NCBI ptt file)
is similar to:
PaperBLAST

HPS_MYCGS / Q9LBW4: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Mycobacterium gastri
Q9LBW4: 3-hexulose-6-phosphate synthase (EC 4.1.2.43) from Mycobacterium gastri

26% id,
74% cov

FAEHP_METBF / Q46DY5: Bifunctional enzyme Fae/Hps; EC 4.2.1.147; EC 4.1.2.43 from Methanosarcina barkeri

21% id,
52% cov

HPS_METAM / Q48907: 3-hexulose-6-phosphate synthase; HPS; D-arabino-3-hexulose-6-phosphate formaldehyde lyase; EC 4.1.2.43 from Methylomonas aminofaciens

49% id,
17% cov

More...

BT2814: dihydrodipicolinate synthase (NCBI ptt file)
is similar to:
PaperBLAST

nahE / P0A144: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

21% id,
91% cov

NAHE1_PSEPU / Q51947: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Pseudomonas putida
Q51947: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Pseudomonas putida

20% id,
92% cov

BT0895: dihydrodipicolinate synthase (NCBI ptt file)
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum

32% id,
44% cov

BT0554: glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

26% id,
50% cov

BT0475: putative phosphoheptose isomerase (NCBI ptt file)
is similar to:
PaperBLAST

hps-phi / Q5JD63: bifunctional 3-hexulose-6-phosphate formaldehyde lyase/6-phospho-3-hexuloisomerase (EC 4.1.2.43; EC 5.3.1.27) from Thermococcus kodakarensis

38% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 9 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1098398-1099297 (frame +2) on 241
is similar to:
PaperBLAST

NSAE_SPHXE / Q9X9Q6: Trans-O-hydroxybenzylidenepyruvate hydratase-aldolase; THBPA hydratase-aldolase; 2'-hydroxybenzalpyruvate aldolase; EC 4.1.2.45 from Sphingobium xenophagum
Q9X9Q6: trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (EC 4.1.2.45) from Sphingobium xenophagum
Also see hits to annotated proteins above

32% id,
45% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory