Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 7 curated entries in PaperBLAST's database that match '4.1.2.5' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1815: low-specificity L-threonine aldolase (NCBI ptt file)
is similar to:
PaperBLAST

Q88R13: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas putida

40% id,
97% cov

AO353_07670: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

39% id,
97% cov

PfGW456L13_1114: L-threonine aldolase (EC 4.1.2.5) from Pseudomonas fluorescens

38% id,
97% cov

More...

BT3375: aspartate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

Q9X266: L-threonine aldolase (EC 4.1.2.5) from Thermotoga maritima

30% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory