Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 22 curated entries in PaperBLAST's database that match '4.1.3.39' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1861: 2-isopropylmalate synthase (NCBI ptt file)
is similar to:
PaperBLAST

HOA_MYCTU / P9WMK5: 4-hydroxy-2-oxohexanoate aldolase; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; 4-hydroxy-2-oxovalerate aldolase; HOA; EC 4.1.3.43; EC 4.1.3.39 from Mycobacterium tuberculosis
P9WMK5: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Mycobacterium tuberculosis

25% id,
86% cov

HOA_STRTE / Q9X9Q0: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Streptomyces tendae

25% id,
84% cov

P51017: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas putida

26% id,
79% cov

More...

BT1697: pyruvate carboxylase subunit B (NCBI ptt file)
is similar to:
PaperBLAST

HOA_ECOLI / P51020: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Escherichia coli
MhpE / b0352: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli
mhpE / GB|BAA13057.1: 4-hydroxy-2-oxovalerate aldolase; EC 4.1.3.39 from Escherichia coli
mhpE / P51020: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Escherichia coli

29% id,
44% cov

HOA_PSEUF / P51016: 4-hydroxy-2-oxovalerate aldolase; HOA; 4-hydroxy-2-keto-pentanoic acid aldolase; 4-hydroxy-2-oxopentanoate aldolase; EC 4.1.3.39 from Pseudomonas sp.
dmpG / P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.
P51016: 4-hydroxy-2-oxovalerate aldolase (EC 4.1.3.39) from Pseudomonas sp.

26% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory