Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 52 curated entries in PaperBLAST's database that match '4.2.1.12'.

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0133: putative sugar phosphate isomerase (NCBI ptt file)
is similar to:
PaperBLAST

G8UQI0: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Tannerella forsythia

79% id,
99% cov

MURQ_ECOLI / P76535: N-acetylmuramic acid 6-phosphate etherase; MurNAc-6-P etherase; N-acetylmuramic acid 6-phosphate hydrolase; N-acetylmuramic acid 6-phosphate lyase; EC 4.2.1.126 from Escherichia coli
YfeU / b2428: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Escherichia coli
murQ / P76535: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Escherichia coli

46% id,
90% cov

P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae

50% id,
83% cov

BT0533: tryptophan synthase beta chain (NCBI ptt file)
is similar to:
PaperBLAST

trpB1 / P50909: β subunit of tryptophan synthase (EC 4.2.1.122) from Thermotoga maritima

61% id,
97% cov

trpB / Q9YGB0: tryptophan synthase β subunit (EC 4.2.1.122) from Thermococcus kodakarensis
Q9YGB0: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 2/2) (EC 4.2.1.20) from Thermococcus kodakarensis

53% id,
98% cov

TrpB / b1261: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli
trpB / P0A879: tryptophan synthase subunit β (EC 4.2.1.122) from Escherichia coli

52% id,
95% cov

More...

BT_4664: tryptophan synthase subunit beta (RefSeq)
is similar to:
PaperBLAST

trpB2 / Q9WZ09: tryptophan synthase β2 subunit (EC 4.2.1.122) from Thermotoga maritima

59% id,
98% cov

Q5JDJ1: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (subunit 1/2) (EC 4.2.1.20) from Thermococcus kodakarensis

52% id,
97% cov

TSBType2 / Q9FFW8: tryptophan synthase, beta subunit (EC 4.2.1.122) from Arabidopsis thaliana

57% id,
86% cov

More...

BT2078: dihydroxy-acid dehydratase (NCBI ptt file)
is similar to:
PaperBLAST

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC 4.2.1.12 from Zymomonas mobilis

27% id,
91% cov

Q1PAG1: phosphogluconate dehydratase (EC 4.2.1.12) from Pseudomonas chlororaphis

32% id,
53% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC 4.2.1.12 from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC 4.2.1.12) from Escherichia coli

30% id,
52% cov

BT0527: tryptophan synthase alpha chain (NCBI ptt file)
is similar to:
PaperBLAST

A0A2U8JPY3: tryptophan synthase (indole-salvaging) (EC 4.2.1.122); tryptophan synthase (EC 4.2.1.20) from Psilocybe cubensis

33% id,
36% cov

BT0554: glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

P44862: N-acetylmuramic acid 6-phosphate etherase (EC 4.2.1.126) from Haemophilus influenzae

26% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory