Curated BLAST for Genomes


Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 5 curated entries in PaperBLAST's database that match '' as complete word(s).

These curated entries have 3 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT2078: dihydroxy-acid dehydratase (NCBI ptt file)
is similar to:

EDD_ZYMMO / P21909: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; EC from Zymomonas mobilis

27% id,
91% cov

Q1PAG1: phosphogluconate dehydratase (EC from Pseudomonas chlororaphis

32% id,
53% cov

EDD_ECOLI / P0ADF6: Phosphogluconate dehydratase; 6-phosphogluconate dehydratase; Entner-Doudoroff dehydrase; EC from Escherichia coli
Edd / b1851: phosphogluconate dehydratase (EC from Escherichia coli
edd / P0ADF6: phosphogluconate dehydratase (EC from Escherichia coli

30% id,
52% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory