Curated BLAST

Curated BLAST for Genomes

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 14 curated entries in PaperBLAST's database that match '4.2.1.25' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT2078: dihydroxy-acid dehydratase (NCBI ptt file) is similar to:	PaperBLAST
BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans	27% id, 85% cov
HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae	27% id, 84% cov
SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti	32% id, 66% cov
ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense Q1JUQ1: L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense	31% id, 62% cov
ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum	30% id, 63% cov
PS417_11000: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas simiae	31% id, 61% cov
AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens	31% id, 61% cov
Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens	30% id, 61% cov
PfGW456L13_3320: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens	30% id, 61% cov
Shewana3_2070: L-arabonate dehydratase (EC 4.2.1.25) from Shewanella sp.	30% id, 60% cov
BPHYT_RS19730: L-arabonate dehydratase (EC 4.2.1.25) from Burkholderia phytofirmans	34% id, 39% cov
SM_b20890: L-arabonate dehydratase (EC 4.2.1.25) from Sinorhizobium meliloti	36% id, 33% cov
ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum I9XDU6: L-Arabinonate dehydratase (EC 4.2.1.25) from Rhizobium leguminosarum	34% id, 35% cov
HSERO_RS05205: L-arabonate dehydratase (EC 4.2.1.25) from Herbaspirillum seropedicae	35% id, 34% cov
PS417_11000: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas simiae	32% id, 33% cov
AO356_24585: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens	32% id, 33% cov
Pf6N2E2_609: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens	32% id, 33% cov
PfGW456L13_3320: L-arabonate dehydratase (EC 4.2.1.25) from Pseudomonas fluorescens	32% id, 33% cov
ARADA_AZOBR / Q1JUQ1: L-arabonate dehydratase; L-arabinonate dehydratase; EC 4.2.1.25 from Azospirillum brasilense Q1JUQ1: L-Arabinonate dehydratase (EC 4.2.1.25) from Azospirillum brasilense	36% id, 28% cov
More...

BT1313: muconate cycloisomerase (NCBI ptt file) is similar to:	PaperBLAST
xacD / D4GP40: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Haloferax volcanii	25% id, 80% cov
SSO26655 / Q97VG1: D-xylonate dehydratase subunit (EC 4.2.1.25; EC 4.2.1.82) from Saccharolobus solfataricus	23% id, 81% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory