Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 65 curated entries in PaperBLAST's database that match '4.2.1.3' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT2072: aconitate hydratase (NCBI ptt file)
is similar to:
PaperBLAST

Q8RP87: aconitate hydratase (EC 4.2.1.3) from Bacteroides fragilis

85% id,
100% cov

ACON_EMENI / C8VG90: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Emericella nidulans

59% id,
93% cov

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Aspergillus fumigatus

58% id,
93% cov

More...

BT1860: 3-isopropylmalate dehydratase large subunit (NCBI ptt file)
is similar to:
PaperBLAST

D3GQL1: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

27% id,
48% cov

D3GQL2: aconitate hydratase (EC 4.2.1.3) from Citrus clementina

27% id,
48% cov

ACO1_ARATH / Q42560: Aconitate hydratase 1; Aconitase 1; Citrate hydro-lyase 1; EC 4.2.1.3 from Arabidopsis thaliana

26% id,
47% cov

BT1859: 3-isopropylmalate dehydratase small subunit (NCBI ptt file)
is similar to:
PaperBLAST

ACON_ASPFU / Q4WLN1: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; Homocitrate dehydratase; EC 4.2.1.3; EC 4.2.1.- from Aspergillus fumigatus

26% id,
20% cov

ACON_CAEEL / P34455: Probable aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Caenorhabditis elegans

28% id,
18% cov

ACON_SCHPO / O13966: Aconitate hydratase, mitochondrial; Aconitase; Citrate hydro-lyase; EC 4.2.1.3 from Schizosaccharomyces pombe

26% id,
18% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory