Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)
Found 7 curated entries in PaperBLAST's database that match '4.2.1.42' as complete word(s).
These curated entries have 4 distinct sequences.
Running ublast with E ≤ 0.01
Found 1 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query
| BT0486: altronate hydrolase (NCBI ptt file) is similar to: | PaperBLAST |
GARD_ECOLI / P39829: Galactarate dehydratase (L-threo-forming); GalcD; EC 4.2.1.42 from Escherichia coli | 35% id, 96% cov |
PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae | 35% id, 97% cov |
HSERO_RS15800: Galactarate dehydratase (EC 4.2.1.42) from Herbaspirillum seropedicae | 34% id, 93% cov |
The hits are sorted by %identity * %coverage (highest first)
Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.
Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.
| 601690-603222 (frame -1) on 241 is similar to: | PaperBLAST |
PS417_04210: Galactarate dehydratase (EC 4.2.1.42) from Pseudomonas simiae | 34% id, 99% cov |
Lawrence Berkeley National Laboratory