Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 33 curated entries in PaperBLAST's database that match '4.2.1.51'.

These curated entries have 27 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT3936: prephenate dehydratase (NCBI ptt file)
is similar to:
PaperBLAST

BT3936: prephenate and/or arogenate dehydratase (EC 4.2.1.51) from Bacteroides thetaiotaomicron

100% id,
100% cov

Echvi_0123: prephenate and/or arogenate dehydratase (EC 4.2.1.51) from Echinicola vietnamensis

41% id,
98% cov

CA265_RS11630: prephenate and/or arogenate dehydratase (EC 4.2.1.51) from Pedobacter sp.

40% id,
97% cov

More...

BT3933: chorismate mutase/prephenate dehydratase (tyrA) (NCBI ptt file)
is similar to:
PaperBLAST

O30012: prephenate dehydrogenase (EC 1.3.1.12); prephenate dehydratase (EC 4.2.1.51); chorismate mutase (EC 5.4.99.5) from Archaeoglobus fulgidus

25% id,
39% cov

Q74NC4: prephenate dehydratase (EC 4.2.1.51) from Nanoarchaeum equitans

22% id,
38% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory