Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 590 curated entries in PaperBLAST's database that match '4.2.3.1'.

These curated entries have 408 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT2401: threonine synthase (NCBI ptt file)
is similar to:
PaperBLAST

THRC_ECOLI / P00934: Threonine synthase; TS; EC 4.2.3.1 from Escherichia coli
ThrC / b0004: threonine synthase (EC 4.2.3.1) from Escherichia coli
thrC / GB|BAB96581.1: threonine synthase; EC 4.2.3.1 from Escherichia coli
thrC / P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli
P00934: threonine synthase (EC 4.2.3.1) from Escherichia coli

44% id,
100% cov

N515DRAFT_0575: threonine synthase (EC 4.2.3.1) from Dyella japonica

38% id,
97% cov

Q8YFS0: threonine synthase (EC 4.2.3.1) from Brucella melitensis

37% id,
99% cov

More...

BT3975: 3-dehydroquinate synthase (NCBI ptt file)
is similar to:
PaperBLAST

EVS_ACTMD / C6WFL3: 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Actinosynnema mirum
Amir_2000 / C6WFL3: 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum
C6WFL3: 2-epi-valiolone synthase (EC 4.2.3.155) from Actinosynnema mirum

31% id,
75% cov

EVS_STIAD / Q08VU0: 2-epi-valiolone synthase; EVS; Sedoheptulose 7-phosphate cyclase; EC 4.2.3.155 from Stigmatella aurantiaca
Q08VU0: 2-epi-valiolone synthase (EC 4.2.3.155) from Stigmatella aurantiaca

32% id,
67% cov

EEVS_STIAD / E3FKM2: 2-epi-5-epi-valiolone synthase; EEVS; EC 4.2.3.152 from Stigmatella aurantiaca

27% id,
78% cov

More...

BT2058: putative isoprenyl synthetase (NCBI ptt file)
is similar to:
PaperBLAST

OBLA_COCH5 / M2V8C1: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Cochliobolus heterostrophus

27% id,
35% cov

OBLA_ASPCI / A0A0U5G0B1: Ophiobolin F synthase; OS; Aspergilol biosynthesis cluster protein AuAS; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Aspergillus calidoustus

23% id,
39% cov

STLSS_EMEVA / A0A0P0ZEM1: Stellatatriene synthase; SS; Stellatic acid biosynthetis gene clusters protein Stl-SS; EC 2.5.1.-; EC 4.2.3.178 from Emericella variicolor

27% id,
28% cov

More...

BT3261: octaprenyl-diphosphate synthase (NCBI ptt file)
is similar to:
PaperBLAST

OBLA_COCH5 / M2V8C1: Ophiobolin F synthase oblA; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Cochliobolus heterostrophus

24% id,
37% cov

OBLA_ASPCL / A1C8C3: Ophiobolin F synthase oblA; acOS; Bifunctional sesterterpene synthase oblA; Ophiobolin biosynthesis cluster protein A; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Aspergillus clavatus
OC / A1C8C3: ophiobolin F synthase (EC 4.2.3.145; EC 2.5.1.81; EC 2.5.1.29) from Aspergillus clavatus

24% id,
36% cov

OBLA_ASPCI / A0A0U5G0B1: Ophiobolin F synthase; OS; Aspergilol biosynthesis cluster protein AuAS; EC 4.2.3.145; EC 2.5.1.29; EC 2.5.1.81 from Aspergillus calidoustus

24% id,
36% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory