Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 7 curated entries in PaperBLAST's database that match '4.3.1.1' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT2755: aspartate ammonia-lyase (NCBI ptt file)
is similar to:
PaperBLAST

Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

57% id,
97% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

56% id,
98% cov

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

54% id,
97% cov

More...

BT3733: argininosuccinate lyase (NCBI ptt file)
is similar to:
PaperBLAST

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

24% id,
68% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory