Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 11 curated entries in PaperBLAST's database that match '5.1.3.29' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1276: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

BT1276: L-fucose mutarotase FucU (EC 5.1.3.29) from Bacteroides thetaiotaomicron

100% id,
100% cov

FUCM_XANCP / Q8P3K1: L-fucose mutarotase; Fucose 1-epimerase; Type-2 mutarotase; EC 5.1.3.29 from Xanthomonas campestris

41% id,
90% cov

BT3666: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

BT1276: L-fucose mutarotase FucU (EC 5.1.3.29) from Bacteroides thetaiotaomicron

64% id,
95% cov

BT4177: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

SM_b21108: L-fucose mutarotase (EC 5.1.3.29) from Sinorhizobium meliloti

31% id,
100% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory