Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 174 curated entries in PaperBLAST's database that match '5.3.1.1'.

These curated entries have 118 distinct sequences.

Running ublast with E ≤ 0.01

Found 14 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT1379: phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (NCBI ptt file)
is similar to:
PaperBLAST

BT1379: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Bacteroides thetaiotaomicron

100% id,
100% cov

Echvi_2515: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Echinicola vietnamensis

57% id,
99% cov

P10372: 1-(5-phosphoribosyl)-5-[(5 phosphoribosylamino)methylideneamino]imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Salmonella enterica

39% id,
96% cov

More...

BT3306: putative sugar isomerase (NCBI ptt file)
is similar to:
PaperBLAST

Q5LIW1: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Bacteroides fragilis

91% id,
100% cov

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

39% id,
94% cov

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli

42% id,
56% cov

More...

BT_0823: glucuronate isomerase (RefSeq)
is similar to:
PaperBLAST

CA265_RS19870: Glucuronate isomerase (EC 5.3.1.12) from Pedobacter sp.

63% id,
100% cov

UXAC_ECOLI / P0A8G3: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Escherichia coli
YgjZ / b3092: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
uxaC / P0A8G3: D-glucoronate/D-galacturonate isomerase (EC 5.3.1.12) from Escherichia coli
A0A140N3B4: glucuronate isomerase (EC 5.3.1.12) from Escherichia coli

57% id,
99% cov

UXAC_BACSU / O34808: Uronate isomerase; Glucuronate isomerase; Uronic isomerase; EC 5.3.1.12 from Bacillus subtilis

49% id,
99% cov

More...

BT3231: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file)
is similar to:
PaperBLAST

PLH5_FORAG / T2KN98: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; P5_isomerase; Polysaccharide utilization locus H protein P5; PUL H protein P5; EC 5.3.1.17 from Formosa agariphila

57% id,
100% cov

KDUI_DICD3 / Q05529: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; EC 5.3.1.17 from Dickeya dadantii
kduI / Q05529: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase subunit (EC 5.3.1.17) from Dickeya dadantii

47% id,
100% cov

KDUI_ECOLI / Q46938: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; EC 5.3.1.17 from Escherichia coli
YqeE / b2843: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17) from Escherichia coli
kduI / Q46938: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17; EC 5.3.1.9) from Escherichia coli
Q46938: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17) from Escherichia coli

47% id,
100% cov

More...

BT4106: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (NCBI ptt file)
is similar to:
PaperBLAST

PLH5_FORAG / T2KN98: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; P5_isomerase; Polysaccharide utilization locus H protein P5; PUL H protein P5; EC 5.3.1.17 from Formosa agariphila

56% id,
100% cov

KDUI_ECOLI / Q46938: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; EC 5.3.1.17 from Escherichia coli
YqeE / b2843: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17) from Escherichia coli
kduI / Q46938: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17; EC 5.3.1.9) from Escherichia coli
Q46938: 5-dehydro-4-deoxy-D-glucuronate isomerase (EC 5.3.1.17) from Escherichia coli

51% id,
96% cov

KDUI_DICD3 / Q05529: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; 5-keto-4-deoxyuronate isomerase; DKI isomerase; EC 5.3.1.17 from Dickeya dadantii
kduI / Q05529: 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase subunit (EC 5.3.1.17) from Dickeya dadantii

46% id,
100% cov

More...

BT3764: L-rhamnose isomerase (NCBI ptt file)
is similar to:
PaperBLAST

RHAA_ECOLI / P32170: L-rhamnose isomerase; RhamIso; EC 5.3.1.14 from Escherichia coli
RhaA / b3903: L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli
rhaA / P32170: L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli
P32170: L-rhamnose isomerase (EC 5.3.1.14) from Escherichia coli

54% id,
99% cov

L7VQ35: L-rhamnose isomerase (EC 5.3.1.14) from Thermoclostridium stercorarium

53% id,
99% cov

D5LNE5: L-rhamnose isomerase (EC 5.3.1.14) from Thermoanaerobacterium saccharolyticum

53% id,
99% cov

More...

BT3929: triosephosphate isomerase (NCBI ptt file)
is similar to:
PaperBLAST

TPIS_DROME / P29613: Triosephosphate isomerase; TIM; Triose-phosphate isomerase; EC 5.3.1.1 from Drosophila melanogaster

50% id,
98% cov

TPIS_CHICK / P00940: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; EC 5.3.1.1; EC 4.2.3.3 from Gallus gallus
P00940: triose-phosphate isomerase (EC 5.3.1.1) from Gallus gallus

48% id,
98% cov

TPIS_PROCL / F5A6E9: Triosephosphate isomerase; TIM; Methylglyoxal synthase; Triose-phosphate isomerase; Allergen Pro c 8.0101; EC 5.3.1.1; EC 4.2.3.3 from Procambarus clarkii

47% id,
98% cov

More...

BT1672: phosphoglycerate kinase (NCBI ptt file)
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

47% id,
60% cov

BT1378: imidazole glycerol phosphate synthase subunit hisF (NCBI ptt file)
is similar to:
PaperBLAST

CCNA_03852: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Caulobacter crescentus

29% id,
95% cov

Psest_0155: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas stutzeri

28% id,
96% cov

PS417_01575: 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) from Pseudomonas simiae

28% id,
97% cov

More...

BT0554: glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

26% id,
84% cov

BT3601: glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file)
is similar to:
PaperBLAST

A0A4Q0VE60: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Clostridium tetani

32% id,
52% cov

KDSD_ECOLI / P45395: Arabinose 5-phosphate isomerase KdsD; API; L-API; EC 5.3.1.13 from Escherichia coli
KdsD / b3197: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli
kdsD: arabinose 5-phosphate isomerase; EC 5.3.1.13 from Escherichia coli
kdsD / P45395: D-arabinose 5-phosphate isomerase KdsD (EC 5.3.1.13) from Escherichia coli

31% id,
33% cov

BT1886: conserved hypothetical protein (NCBI ptt file)
is similar to:
PaperBLAST

TPIS_METJA / Q58923: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanocaldococcus jannaschii
tpiA / Q58923: triosephosphate isomerase monomer (EC 5.3.1.1) from Methanocaldococcus jannaschii
Q58923: triose-phosphate isomerase (EC 5.3.1.1) from Methanocaldococcus jannaschii

34% id,
32% cov

TPIS_PYRWO / P62003: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
tpiA / P62003: triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
P62002: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei

31% id,
30% cov

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

30% id,
31% cov

BT0133: putative sugar phosphate isomerase (NCBI ptt file)
is similar to:
PaperBLAST

KDSD_PSEAE / Q9HVW0: Arabinose 5-phosphate isomerase KdsD; API; Pa-KdsD; EC 5.3.1.13 from Pseudomonas aeruginosa
Q9HVW0: arabinose-5-phosphate isomerase (EC 5.3.1.13) from Pseudomonas aeruginosa

26% id,
40% cov

BT4042: putative Mg2+ transporter MgtE (NCBI ptt file)
is similar to:
PaperBLAST

KDSD_FRATT / Q5NGP7: Arabinose 5-phosphate isomerase KdsD; API; EC 5.3.1.13 from Francisella tularensis

26% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory