Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0351: L-arabinose isomerase (NCBI ptt file)
is similar to:		 PaperBLAST

Q8AAW1: L-arabinose isomerase (EC 5.3.1.4) from Bacteroides thetaiotaomicron

 100% id,
100% cov

Echvi_1879: L-arabinose isomerase (EC 5.3.1.4) from Echinicola vietnamensis

 51% id,
100% cov

CA265_RS08615: L-arabinose isomerase (EC 5.3.1.4) from Pedobacter sp.

 51% id,
99% cov

More...

BT2909: putative L-arabinose isomerase (NCBI ptt file)
is similar to:		 PaperBLAST

Q70G56: L-arabinose isomerase (EC 5.3.1.4) from Thermoanaerobacter mathranii

 24% id,
99% cov

BT3306: putative sugar isomerase (NCBI ptt file)
is similar to:		 PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

 40% id,
59% cov

BT3601: glucosamine--fructose-6-phosphate aminotransferase (NCBI ptt file)
is similar to:		 PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

 30% id,
33% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory