Curated BLAST for Genomes

 

Curated BLAST

Searching in Bacteroides thetaiotaomicron VPI-5482 (Btheta)

Found 34 curated entries in PaperBLAST's database that match '5.3.1.8' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Bacteroides thetaiotaomicron VPI-5482, or try another query

BT0373: mannose-6-phosphate isomerase (NCBI ptt file)
is similar to:
PaperBLAST

MANA2_BACSU / O05511: Probable mannose-6-phosphate isomerase GmuF; Glucomannan utilization protein F; Phosphohexomutase; Phosphomannose isomerase; PMI; EC 5.3.1.8 from Bacillus subtilis

36% id,
96% cov

Q9AGZ4: mannose-6-phosphate isomerase (EC 5.3.1.8) from Bacillus subtilis

35% id,
96% cov

MANA1_BACSU / O31646: Mannose-6-phosphate isomerase ManA; Phosphohexomutase; Phosphomannose isomerase; PMI; EC 5.3.1.8 from Bacillus subtilis

35% id,
93% cov

More...

BT3950: phosphoglucomutase/phosphomannomutase (NCBI ptt file)
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

33% id,
97% cov

BT2781: putative mannose-1-phosphate guanylyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii

35% id,
72% cov

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa

35% id,
72% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens

33% id,
72% cov

BT0558: mannose-1-phosphate guanylyltransferase (NCBI ptt file)
is similar to:
PaperBLAST

PH0925 / O58649: GDP-D-mannose pyrophosphorylase (EC 2.7.7.13; EC 5.3.1.8) from Pyrococcus horikoshii

34% id,
73% cov

ALGA_PSEAE / P07874: Alginate biosynthesis protein AlgA; EC 5.3.1.8; EC 2.7.7.13 from Pseudomonas aeruginosa
algA / P07874: phosphomannose isomerase (EC 5.3.1.8; EC 2.7.7.13) from Pseudomonas aeruginosa

34% id,
71% cov

algA / GI|31296823: alginate biosynthesis protein AlgA; EC 2.7.7.13; EC 5.3.1.8 from Pseudomonas fluorescens

34% id,
70% cov

BT2104: ROK family member transcriptional repressor (NCBI ptt file)
is similar to:
PaperBLAST

Q9AGZ4: mannose-6-phosphate isomerase (EC 5.3.1.8) from Bacillus subtilis

25% id,
97% cov

MANA2_BACSU / O05511: Probable mannose-6-phosphate isomerase GmuF; Glucomannan utilization protein F; Phosphohexomutase; Phosphomannose isomerase; PMI; EC 5.3.1.8 from Bacillus subtilis

24% id,
97% cov

MANA1_BACSU / O31646: Mannose-6-phosphate isomerase ManA; Phosphohexomutase; Phosphomannose isomerase; PMI; EC 5.3.1.8 from Bacillus subtilis

26% id,
66% cov

BT1548: phosphoglucomutase phosphomannomutase (NCBI ptt file)
is similar to:
PaperBLAST

ST0242 / Q976E4: hexose-6-phosphate mutase/isomerase (EC 5.3.1.8; EC 5.3.1.9; EC 5.4.2.10; EC 5.4.2.13) from Sulfurisphaera tokodaii

24% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 7 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory